miRNA display CGI


Results 1 - 20 of 276 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9194 3' -54.9 NC_002512.2 + 46 0.68 0.928235
Target:  5'- cGGGAUgAGcGgGAUGAG-CGGGAGGAGg -3'
miRNA:   3'- -CUCUGgUC-UgCUGCUCuGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 84 0.67 0.965303
Target:  5'- gGAGGCgAGA-GGCG--GCGGGGGGAGa -3'
miRNA:   3'- -CUCUGgUCUgCUGCucUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 109 0.82 0.292427
Target:  5'- gGAGGCCggcaggAGGCGGCagagGAGGCGAGAGGAGg -3'
miRNA:   3'- -CUCUGG------UCUGCUG----CUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 154 0.67 0.962044
Target:  5'- cGGAggAGGCGGCagGAGGCGgcAGAGGAGg -3'
miRNA:   3'- cUCUggUCUGCUG--CUCUGC--UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 231 0.68 0.946902
Target:  5'- aAGGgCAGGCgGGCGGGAaaAGGGGAGa -3'
miRNA:   3'- cUCUgGUCUG-CUGCUCUgcUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 4560 0.67 0.962044
Target:  5'- -cGACC-GACGGCugcggcgucuGGGGCGgcGGAGGAGg -3'
miRNA:   3'- cuCUGGuCUGCUG----------CUCUGC--UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 5213 0.66 0.976375
Target:  5'- cGGGCCAGcCGACGGcGGCGGGAa--- -3'
miRNA:   3'- cUCUGGUCuGCUGCU-CUGCUCUccuc -5'
9194 3' -54.9 NC_002512.2 + 5887 0.68 0.93324
Target:  5'- -cGACUcgucgcucguGGACGGCGGGGCGcgcGGGGGAu -3'
miRNA:   3'- cuCUGG----------UCUGCUGCUCUGC---UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 6338 0.67 0.962044
Target:  5'- gGGGACCGGGCG-CGGGGCcGGcGGGc -3'
miRNA:   3'- -CUCUGGUCUGCuGCUCUGcUCuCCUc -5'
9194 3' -54.9 NC_002512.2 + 7273 0.66 0.976375
Target:  5'- cGGGAUCGGGCG-CGAGGCcccGGGGGc -3'
miRNA:   3'- -CUCUGGUCUGCuGCUCUGcu-CUCCUc -5'
9194 3' -54.9 NC_002512.2 + 9974 0.99 0.027517
Target:  5'- gGAGACC-GACGACGAGACGAGAGGAGg -3'
miRNA:   3'- -CUCUGGuCUGCUGCUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 11067 0.67 0.962044
Target:  5'- aGGGCCgcGGAgGGCGAGACgGAGcGGAc -3'
miRNA:   3'- cUCUGG--UCUgCUGCUCUG-CUCuCCUc -5'
9194 3' -54.9 NC_002512.2 + 11399 0.68 0.942572
Target:  5'- cGGACgCGGACGacccGCGGGACGA--GGAGa -3'
miRNA:   3'- cUCUG-GUCUGC----UGCUCUGCUcuCCUC- -5'
9194 3' -54.9 NC_002512.2 + 11476 0.8 0.380397
Target:  5'- gGAGACCgcgaGGACGACGAcGACGgAGAGGAc -3'
miRNA:   3'- -CUCUGG----UCUGCUGCU-CUGC-UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 11544 0.66 0.980819
Target:  5'- -cGACCuGGACGA--GGACGAgGAGGAc -3'
miRNA:   3'- cuCUGG-UCUGCUgcUCUGCU-CUCCUc -5'
9194 3' -54.9 NC_002512.2 + 11728 0.68 0.946902
Target:  5'- cGAGGCUAcGGgGACGAGGcCGGGAGcGAc -3'
miRNA:   3'- -CUCUGGU-CUgCUGCUCU-GCUCUC-CUc -5'
9194 3' -54.9 NC_002512.2 + 11834 0.68 0.938018
Target:  5'- -uGAUCcccGACGACGcGGCGAcGGGGAGg -3'
miRNA:   3'- cuCUGGu--CUGCUGCuCUGCU-CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 13027 0.68 0.928235
Target:  5'- -cGACgCGGACGACGAgGGCGAGAu--- -3'
miRNA:   3'- cuCUG-GUCUGCUGCU-CUGCUCUccuc -5'
9194 3' -54.9 NC_002512.2 + 13992 0.76 0.590221
Target:  5'- gGGGACgGGGgGACGAggGACGAGGGGAc -3'
miRNA:   3'- -CUCUGgUCUgCUGCU--CUGCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 15218 0.7 0.873152
Target:  5'- gGAGGgCGGGuCGcCGAGGCGccgGGAGGAGa -3'
miRNA:   3'- -CUCUgGUCU-GCuGCUCUGC---UCUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.