miRNA display CGI


Results 1 - 20 of 276 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9194 3' -54.9 NC_002512.2 + 9974 0.99 0.027517
Target:  5'- gGAGACC-GACGACGAGACGAGAGGAGg -3'
miRNA:   3'- -CUCUGGuCUGCUGCUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 120621 0.74 0.689471
Target:  5'- uGAGAgCgggAGGCGGCGGGACGGGAcgccGGGGg -3'
miRNA:   3'- -CUCUgG---UCUGCUGCUCUGCUCU----CCUC- -5'
9194 3' -54.9 NC_002512.2 + 140937 0.73 0.747342
Target:  5'- cGGGAC--GGCGACGAGGCGgaAGGGGGGc -3'
miRNA:   3'- -CUCUGguCUGCUGCUCUGC--UCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 56461 0.66 0.980819
Target:  5'- cGAGACgAGGCGcGCGAuGCGAucGAcGGAGa -3'
miRNA:   3'- -CUCUGgUCUGC-UGCUcUGCU--CU-CCUC- -5'
9194 3' -54.9 NC_002512.2 + 11476 0.8 0.380397
Target:  5'- gGAGACCgcgaGGACGACGAcGACGgAGAGGAc -3'
miRNA:   3'- -CUCUGG----UCUGCUGCU-CUGC-UCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 53838 0.79 0.404986
Target:  5'- aGAGACCcggGGGCGGCGccgGGAgGAGAGGGGg -3'
miRNA:   3'- -CUCUGG---UCUGCUGC---UCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 70697 0.77 0.512482
Target:  5'- -cGGCCGGGCGG-GGGACGGGGGGAc -3'
miRNA:   3'- cuCUGGUCUGCUgCUCUGCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 49540 0.77 0.521998
Target:  5'- -cGACUGGuACGugGAGACGAG-GGAGa -3'
miRNA:   3'- cuCUGGUC-UGCugCUCUGCUCuCCUC- -5'
9194 3' -54.9 NC_002512.2 + 118313 0.75 0.610062
Target:  5'- cGAGcGCgCGGACGACGAGA-GGGAGGAc -3'
miRNA:   3'- -CUC-UG-GUCUGCUGCUCUgCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 97373 0.74 0.669731
Target:  5'- gGGGACCGcGGCGGCcgGAGACGGGGGcGGGc -3'
miRNA:   3'- -CUCUGGU-CUGCUG--CUCUGCUCUC-CUC- -5'
9194 3' -54.9 NC_002512.2 + 133298 0.75 0.62001
Target:  5'- cGGuccCCAGAgGAcccCGAGGCGGGAGGAGg -3'
miRNA:   3'- cUCu--GGUCUgCU---GCUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 227960 0.76 0.590221
Target:  5'- gGGGACCgaaagcGGAUgGACGGGAgGAGGGGAGg -3'
miRNA:   3'- -CUCUGG------UCUG-CUGCUCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 109 0.82 0.292427
Target:  5'- gGAGGCCggcaggAGGCGGCagagGAGGCGAGAGGAGg -3'
miRNA:   3'- -CUCUGG------UCUGCUG----CUCUGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 97215 0.75 0.639923
Target:  5'- cGGGCCGGGCGGgacguCGAGGCgcuggGAGAGGAGc -3'
miRNA:   3'- cUCUGGUCUGCU-----GCUCUG-----CUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 123181 0.81 0.3343
Target:  5'- cGAGGCCgAGGCggGACGGGACGAgGAGGAGc -3'
miRNA:   3'- -CUCUGG-UCUG--CUGCUCUGCU-CUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 13992 0.76 0.590221
Target:  5'- gGGGACgGGGgGACGAggGACGAGGGGAc -3'
miRNA:   3'- -CUCUGgUCUgCUGCU--CUGCUCUCCUc -5'
9194 3' -54.9 NC_002512.2 + 228992 0.75 0.649875
Target:  5'- cGGaACCGuGGCGGCGGGacuaGCGGGAGGAGg -3'
miRNA:   3'- cUC-UGGU-CUGCUGCUC----UGCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 228918 0.73 0.709031
Target:  5'- cGAGAgaGGACGACGAGAagaGAGAcagacGGAGg -3'
miRNA:   3'- -CUCUggUCUGCUGCUCUg--CUCU-----CCUC- -5'
9194 3' -54.9 NC_002512.2 + 229488 0.81 0.341692
Target:  5'- gGAGGCgagAGGCGGCGGGGgGAGAGGAGg -3'
miRNA:   3'- -CUCUGg--UCUGCUGCUCUgCUCUCCUC- -5'
9194 3' -54.9 NC_002512.2 + 74672 0.79 0.413402
Target:  5'- gGGGACgGGACGGaGGGACGGGAGGAc -3'
miRNA:   3'- -CUCUGgUCUGCUgCUCUGCUCUCCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.