Results 21 - 40 of 276 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9194 | 3' | -54.9 | NC_002512.2 | + | 73157 | 0.72 | 0.784122 |
Target: 5'- aAGuACCAGACGACG-GACGAGAccagcugcGGAc -3' miRNA: 3'- cUC-UGGUCUGCUGCuCUGCUCU--------CCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 140937 | 0.73 | 0.747342 |
Target: 5'- cGGGAC--GGCGACGAGGCGgaAGGGGGGc -3' miRNA: 3'- -CUCUGguCUGCUGCUCUGC--UCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 227960 | 0.76 | 0.590221 |
Target: 5'- gGGGACCgaaagcGGAUgGACGGGAgGAGGGGAGg -3' miRNA: 3'- -CUCUGG------UCUG-CUGCUCUgCUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 229488 | 0.81 | 0.341692 |
Target: 5'- gGAGGCgagAGGCGGCGGGGgGAGAGGAGg -3' miRNA: 3'- -CUCUGg--UCUGCUGCUCUgCUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 82043 | 0.7 | 0.85857 |
Target: 5'- --cGCCGG-CGGCGGucgcGGCGGGAGGAGu -3' miRNA: 3'- cucUGGUCuGCUGCU----CUGCUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 189523 | 0.72 | 0.80177 |
Target: 5'- gGAGACCGaGCGGCGcAGGCcccGAGGGGAa -3' miRNA: 3'- -CUCUGGUcUGCUGC-UCUG---CUCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 120621 | 0.74 | 0.689471 |
Target: 5'- uGAGAgCgggAGGCGGCGGGACGGGAcgccGGGGg -3' miRNA: 3'- -CUCUgG---UCUGCUGCUCUGCUCU----CCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 123181 | 0.81 | 0.3343 |
Target: 5'- cGAGGCCgAGGCggGACGGGACGAgGAGGAGc -3' miRNA: 3'- -CUCUGG-UCUG--CUGCUCUGCU-CUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 58125 | 0.72 | 0.80177 |
Target: 5'- -cGACCgAGA--GCGAGGCGAGAGGGc -3' miRNA: 3'- cuCUGG-UCUgcUGCUCUGCUCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 109 | 0.82 | 0.292427 |
Target: 5'- gGAGGCCggcaggAGGCGGCagagGAGGCGAGAGGAGg -3' miRNA: 3'- -CUCUGG------UCUGCUG----CUCUGCUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 228918 | 0.73 | 0.709031 |
Target: 5'- cGAGAgaGGACGACGAGAagaGAGAcagacGGAGg -3' miRNA: 3'- -CUCUggUCUGCUGCUCUg--CUCU-----CCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 121833 | 0.72 | 0.784122 |
Target: 5'- -cGGCCGGACGGgGgggaGGACGGcGGGGAGg -3' miRNA: 3'- cuCUGGUCUGCUgC----UCUGCU-CUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 97215 | 0.75 | 0.639923 |
Target: 5'- cGGGCCGGGCGGgacguCGAGGCgcuggGAGAGGAGc -3' miRNA: 3'- cUCUGGUCUGCU-----GCUCUG-----CUCUCCUC- -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 118313 | 0.75 | 0.610062 |
Target: 5'- cGAGcGCgCGGACGACGAGA-GGGAGGAc -3' miRNA: 3'- -CUC-UG-GUCUGCUGCUCUgCUCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 70697 | 0.77 | 0.512482 |
Target: 5'- -cGGCCGGGCGG-GGGACGGGGGGAc -3' miRNA: 3'- cuCUGGUCUGCUgCUCUGCUCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 11476 | 0.8 | 0.380397 |
Target: 5'- gGAGACCgcgaGGACGACGAcGACGgAGAGGAc -3' miRNA: 3'- -CUCUGG----UCUGCUGCU-CUGC-UCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 86439 | 0.7 | 0.880139 |
Target: 5'- cGGACgGGGCG-CGGGACGGG-GGAc -3' miRNA: 3'- cUCUGgUCUGCuGCUCUGCUCuCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 26213 | 0.7 | 0.865231 |
Target: 5'- gGGGACCAccguGGCGACgGAGACGGGAccgguauGGAc -3' miRNA: 3'- -CUCUGGU----CUGCUG-CUCUGCUCU-------CCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 89461 | 0.71 | 0.835261 |
Target: 5'- aAGGCgAG-CGACGcGGACGGGAGGGa -3' miRNA: 3'- cUCUGgUCuGCUGC-UCUGCUCUCCUc -5' |
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9194 | 3' | -54.9 | NC_002512.2 | + | 55640 | 0.71 | 0.81038 |
Target: 5'- cGGAcCCGGGCGA-GGGAgGAGAGGAc -3' miRNA: 3'- cUCU-GGUCUGCUgCUCUgCUCUCCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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