miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9194 5' -62.4 NC_002512.2 + 97299 0.66 0.782581
Target:  5'- cGUCUgcucgCCGAacCCCUGGCCg---CGCCCGc -3'
miRNA:   3'- -CAGA-----GGCU--GGGGCCGGagcaGUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 127544 0.66 0.782581
Target:  5'- ---aCCGACgCCCGGacccggCUCGUCGUCCGg -3'
miRNA:   3'- cagaGGCUG-GGGCCg-----GAGCAGUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 108479 0.66 0.777448
Target:  5'- cGUCUCCcuccacgccaggcgcGGCUCCGuCCggcCGUCGCCCu -3'
miRNA:   3'- -CAGAGG---------------CUGGGGCcGGa--GCAGUGGGc -5'
9194 5' -62.4 NC_002512.2 + 90397 0.66 0.774003
Target:  5'- gGUCUugCCGGCgCCGGCCg---UGCCCGu -3'
miRNA:   3'- -CAGA--GGCUGgGGCCGGagcaGUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 152362 0.66 0.774003
Target:  5'- cGUCUCCGGUCCCGaucgaCCg-GUCGCCCc -3'
miRNA:   3'- -CAGAGGCUGGGGCc----GGagCAGUGGGc -5'
9194 5' -62.4 NC_002512.2 + 16544 0.66 0.774003
Target:  5'- cGUCcccCUGGCUCCGGauguaCUCGUCgggcaGCCCGu -3'
miRNA:   3'- -CAGa--GGCUGGGGCCg----GAGCAG-----UGGGC- -5'
9194 5' -62.4 NC_002512.2 + 22142 0.66 0.774003
Target:  5'- -gCUCC-ACCCCGGag-CGUCcCCCGc -3'
miRNA:   3'- caGAGGcUGGGGCCggaGCAGuGGGC- -5'
9194 5' -62.4 NC_002512.2 + 108153 0.66 0.774003
Target:  5'- -gCUCCGACUccuCCGGCgUCGccggCGCCUu -3'
miRNA:   3'- caGAGGCUGG---GGCCGgAGCa---GUGGGc -5'
9194 5' -62.4 NC_002512.2 + 217482 0.66 0.774003
Target:  5'- -gCUCgCGAUCCCGGCgCcgccgcCGcCGCCCGa -3'
miRNA:   3'- caGAG-GCUGGGGCCG-Ga-----GCaGUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 77381 0.66 0.774003
Target:  5'- ---cCCGACCCCGGaacgCUC--CACCCGu -3'
miRNA:   3'- cagaGGCUGGGGCCg---GAGcaGUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 111398 0.66 0.774003
Target:  5'- cGUC-CCG-CCCCGGCagCUCGgCGCCg- -3'
miRNA:   3'- -CAGaGGCuGGGGCCG--GAGCaGUGGgc -5'
9194 5' -62.4 NC_002512.2 + 107135 0.66 0.768804
Target:  5'- -cCUCCGGCCCgGGCgcccccaucagcgCGUuucCGCCCGg -3'
miRNA:   3'- caGAGGCUGGGgCCGga-----------GCA---GUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 141696 0.66 0.765317
Target:  5'- gGUCUCaCGACUCCcuCCUCGUC-CCgGa -3'
miRNA:   3'- -CAGAG-GCUGGGGccGGAGCAGuGGgC- -5'
9194 5' -62.4 NC_002512.2 + 152685 0.66 0.765317
Target:  5'- ---gCCGGCggCCGGUCUCGUCGcgucCCCGg -3'
miRNA:   3'- cagaGGCUGg-GGCCGGAGCAGU----GGGC- -5'
9194 5' -62.4 NC_002512.2 + 129827 0.66 0.765317
Target:  5'- cGUCggcgccgCCGcCCCCGcGUCUCaG-CGCCCGg -3'
miRNA:   3'- -CAGa------GGCuGGGGC-CGGAG-CaGUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 37064 0.66 0.765317
Target:  5'- cGUCcacCUGGCCCCGGUg-CGaUCGCCCc -3'
miRNA:   3'- -CAGa--GGCUGGGGCCGgaGC-AGUGGGc -5'
9194 5' -62.4 NC_002512.2 + 135230 0.66 0.765317
Target:  5'- ---cCCGGCCCCGggccGCCUCGagGCCg- -3'
miRNA:   3'- cagaGGCUGGGGC----CGGAGCagUGGgc -5'
9194 5' -62.4 NC_002512.2 + 85934 0.66 0.765317
Target:  5'- cGUCguggaGGCCCUGGaCgUCGUCAUCCu -3'
miRNA:   3'- -CAGagg--CUGGGGCC-GgAGCAGUGGGc -5'
9194 5' -62.4 NC_002512.2 + 122681 0.66 0.765317
Target:  5'- cUCcCCGGCCgCGGCC-CGgcuggUGCCCGu -3'
miRNA:   3'- cAGaGGCUGGgGCCGGaGCa----GUGGGC- -5'
9194 5' -62.4 NC_002512.2 + 98352 0.66 0.765317
Target:  5'- ----gCGGCCCCuccGCCUCGUCuCCCu -3'
miRNA:   3'- cagagGCUGGGGc--CGGAGCAGuGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.