miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9195 3' -61.6 NC_002512.2 + 227952 0.66 0.810057
Target:  5'- cGGgGGAGCGCGggggagccggagagGagGGCCCCGgCg -3'
miRNA:   3'- uCCaUCUCGCGCag------------CagCCGGGGCgG- -5'
9195 3' -61.6 NC_002512.2 + 123063 0.66 0.80924
Target:  5'- cGGaAGAG-GagGUCGcggCGGCCUCGCCc -3'
miRNA:   3'- uCCaUCUCgCg-CAGCa--GCCGGGGCGG- -5'
9195 3' -61.6 NC_002512.2 + 169068 0.66 0.80924
Target:  5'- aGGGgcuccgcGGcGGCgGCGUCG-CGGCCCgCGUCc -3'
miRNA:   3'- -UCCa------UC-UCG-CGCAGCaGCCGGG-GCGG- -5'
9195 3' -61.6 NC_002512.2 + 127820 0.66 0.80924
Target:  5'- cGGGUcccggcuccgGGAG-GuCGUCGgCGGCgUCCGCCg -3'
miRNA:   3'- -UCCA----------UCUCgC-GCAGCaGCCG-GGGCGG- -5'
9195 3' -61.6 NC_002512.2 + 108689 0.66 0.80924
Target:  5'- ---gAGGGCGC--UGUCGGCCagCGCCc -3'
miRNA:   3'- uccaUCUCGCGcaGCAGCCGGg-GCGG- -5'
9195 3' -61.6 NC_002512.2 + 91673 0.66 0.80924
Target:  5'- ------cGCGCGgacgucCGUCGGCCCCGaCg -3'
miRNA:   3'- uccaucuCGCGCa-----GCAGCCGGGGCgG- -5'
9195 3' -61.6 NC_002512.2 + 21061 0.66 0.80924
Target:  5'- cGGcgcgugAGGGCGCacgggCGgCGGUCCCGCUc -3'
miRNA:   3'- uCCa-----UCUCGCGca---GCaGCCGGGGCGG- -5'
9195 3' -61.6 NC_002512.2 + 99021 0.66 0.80924
Target:  5'- --aUAGGGCGCGUCGgCGagggcGCCUCGUa -3'
miRNA:   3'- uccAUCUCGCGCAGCaGC-----CGGGGCGg -5'
9195 3' -61.6 NC_002512.2 + 182028 0.66 0.800999
Target:  5'- cGGUAGAaggcccucGUGCGgugcaggaUGUCGGCCagccgCGCCg -3'
miRNA:   3'- uCCAUCU--------CGCGCa-------GCAGCCGGg----GCGG- -5'
9195 3' -61.6 NC_002512.2 + 91914 0.66 0.800999
Target:  5'- gGGGcGGcGGCGCGcCGUCGGCg--GCCg -3'
miRNA:   3'- -UCCaUC-UCGCGCaGCAGCCGgggCGG- -5'
9195 3' -61.6 NC_002512.2 + 83213 0.66 0.800999
Target:  5'- ---cGGGGCGgGgggagCGUCGGUCCCGg- -3'
miRNA:   3'- uccaUCUCGCgCa----GCAGCCGGGGCgg -5'
9195 3' -61.6 NC_002512.2 + 130137 0.66 0.800999
Target:  5'- gGGGUGGuGuCGCGgccgCGg-GGCCCgGCg -3'
miRNA:   3'- -UCCAUCuC-GCGCa---GCagCCGGGgCGg -5'
9195 3' -61.6 NC_002512.2 + 38388 0.66 0.800999
Target:  5'- uAGGaagGGAGCGCGcCgGUCG-CCgCGCUg -3'
miRNA:   3'- -UCCa--UCUCGCGCaG-CAGCcGGgGCGG- -5'
9195 3' -61.6 NC_002512.2 + 21308 0.66 0.800168
Target:  5'- cGGacccgcuGCGCGUCGagcUCGGCCugacgcaCCGCCc -3'
miRNA:   3'- uCCaucu---CGCGCAGC---AGCCGG-------GGCGG- -5'
9195 3' -61.6 NC_002512.2 + 5827 0.66 0.800168
Target:  5'- gAGGUcgcAGA-CGCccgacgaGUCGUccccggCGGCCCCGUCg -3'
miRNA:   3'- -UCCA---UCUcGCG-------CAGCA------GCCGGGGCGG- -5'
9195 3' -61.6 NC_002512.2 + 209563 0.66 0.798501
Target:  5'- ---cGGAGCGCGgucucgacggcuccUCGUcCGGCacggucaCCGCCa -3'
miRNA:   3'- uccaUCUCGCGC--------------AGCA-GCCGg------GGCGG- -5'
9195 3' -61.6 NC_002512.2 + 29042 0.66 0.792626
Target:  5'- cGGcAGAGaCGCGcCG-CGcCCCCGCUg -3'
miRNA:   3'- uCCaUCUC-GCGCaGCaGCcGGGGCGG- -5'
9195 3' -61.6 NC_002512.2 + 158994 0.66 0.792626
Target:  5'- gGGGcGGAG-GCGg---CGGCCCCGgCg -3'
miRNA:   3'- -UCCaUCUCgCGCagcaGCCGGGGCgG- -5'
9195 3' -61.6 NC_002512.2 + 100461 0.66 0.792626
Target:  5'- cGGcgaAGAGCGCGuucUCGgucgUGGCCCgGaCCu -3'
miRNA:   3'- uCCa--UCUCGCGC---AGCa---GCCGGGgC-GG- -5'
9195 3' -61.6 NC_002512.2 + 135789 0.66 0.792626
Target:  5'- uGGcGGAG-GaGUCGgacCGGCCgCCGCCg -3'
miRNA:   3'- uCCaUCUCgCgCAGCa--GCCGG-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.