miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9195 5' -53.1 NC_002512.2 + 101752 0.66 0.992069
Target:  5'- -aGGUGGUGGCCc-GGGCGcUCCGUc- -3'
miRNA:   3'- caUCAUCGCCGGcuUCUGC-AGGUAcu -5'
9195 5' -53.1 NC_002512.2 + 112387 0.66 0.992069
Target:  5'- -cGGUGGCGGCCuuGAAccagccGACGUUgAUGu -3'
miRNA:   3'- caUCAUCGCCGG--CUU------CUGCAGgUACu -5'
9195 5' -53.1 NC_002512.2 + 194969 0.66 0.99095
Target:  5'- -----cGCGGaUCGAggcgcauaGGACGUCCAUGGc -3'
miRNA:   3'- caucauCGCC-GGCU--------UCUGCAGGUACU- -5'
9195 5' -53.1 NC_002512.2 + 82127 0.66 0.99095
Target:  5'- -aGGUccucGCGGCUGAGcGCGUCCAg-- -3'
miRNA:   3'- caUCAu---CGCCGGCUUcUGCAGGUacu -5'
9195 5' -53.1 NC_002512.2 + 9092 0.66 0.99095
Target:  5'- ----gAGCgGGUCGAGGACGauccccagcaggUCCAUGGa -3'
miRNA:   3'- caucaUCG-CCGGCUUCUGC------------AGGUACU- -5'
9195 5' -53.1 NC_002512.2 + 59832 0.66 0.99095
Target:  5'- ----aGGCGGCCGcggcGGCGgcggCCAUGGc -3'
miRNA:   3'- caucaUCGCCGGCuu--CUGCa---GGUACU- -5'
9195 5' -53.1 NC_002512.2 + 192691 0.66 0.99095
Target:  5'- uGUGGcGGCGcGCCGAGGcCGUCUu--- -3'
miRNA:   3'- -CAUCaUCGC-CGGCUUCuGCAGGuacu -5'
9195 5' -53.1 NC_002512.2 + 92702 0.66 0.99095
Target:  5'- ----gGGCGGaCCGAcgacgccguacGGACGUCCggGGg -3'
miRNA:   3'- caucaUCGCC-GGCU-----------UCUGCAGGuaCU- -5'
9195 5' -53.1 NC_002512.2 + 132985 0.66 0.99095
Target:  5'- -gGGUAGaCGcGCC-AGGACGggCCAUGGc -3'
miRNA:   3'- caUCAUC-GC-CGGcUUCUGCa-GGUACU- -5'
9195 5' -53.1 NC_002512.2 + 113947 0.66 0.989711
Target:  5'- -gAG-AGCaGGCCgcgGAAGACGUgCGUGGu -3'
miRNA:   3'- caUCaUCG-CCGG---CUUCUGCAgGUACU- -5'
9195 5' -53.1 NC_002512.2 + 26950 0.66 0.989711
Target:  5'- ----cGGCGGCgGAGccagacccuGACGUUCGUGAc -3'
miRNA:   3'- caucaUCGCCGgCUU---------CUGCAGGUACU- -5'
9195 5' -53.1 NC_002512.2 + 226383 0.66 0.988343
Target:  5'- -gGGUGGagGGCCGAcGACGgcgCCggGAc -3'
miRNA:   3'- caUCAUCg-CCGGCUuCUGCa--GGuaCU- -5'
9195 5' -53.1 NC_002512.2 + 189683 0.66 0.988343
Target:  5'- cUGGUaccGGCGGCCcucgucGucGACGUCCGgggGAu -3'
miRNA:   3'- cAUCA---UCGCCGG------CuuCUGCAGGUa--CU- -5'
9195 5' -53.1 NC_002512.2 + 85578 0.66 0.988343
Target:  5'- -cGGgAGCGGCCGGgagAGcGCGUCCGc-- -3'
miRNA:   3'- caUCaUCGCCGGCU---UC-UGCAGGUacu -5'
9195 5' -53.1 NC_002512.2 + 138212 0.66 0.986838
Target:  5'- --cGUcGgGGCCGAcGGACGUCCGc-- -3'
miRNA:   3'- cauCAuCgCCGGCU-UCUGCAGGUacu -5'
9195 5' -53.1 NC_002512.2 + 153279 0.66 0.986838
Target:  5'- ---aUGGCGGCCccgGAcAGACGUCCGa-- -3'
miRNA:   3'- caucAUCGCCGG---CU-UCUGCAGGUacu -5'
9195 5' -53.1 NC_002512.2 + 228805 0.66 0.986838
Target:  5'- -aGGUGGCGG-CGAAGACGaUCAa-- -3'
miRNA:   3'- caUCAUCGCCgGCUUCUGCaGGUacu -5'
9195 5' -53.1 NC_002512.2 + 220101 0.67 0.985187
Target:  5'- -gAGga--GGUCG-AGGCGUCCGUGAg -3'
miRNA:   3'- caUCaucgCCGGCuUCUGCAGGUACU- -5'
9195 5' -53.1 NC_002512.2 + 180575 0.67 0.985187
Target:  5'- -cGGUGGCucucuaucagGGCCGu-GGCGUCCGUc- -3'
miRNA:   3'- caUCAUCG----------CCGGCuuCUGCAGGUAcu -5'
9195 5' -53.1 NC_002512.2 + 71750 0.67 0.985187
Target:  5'- gGUAGUcGCggaGGCCGAAGAUG-CCGagGAa -3'
miRNA:   3'- -CAUCAuCG---CCGGCUUCUGCaGGUa-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.