miRNA display CGI


Results 1 - 20 of 249 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 3' -68.3 NC_002512.2 + 114168 0.66 0.521338
Target:  5'- gGCCCGguccuccucgguGGcGCCGGcgucGGGCCCgGcGGCCa -3'
miRNA:   3'- -CGGGU------------CC-CGGCC----CCUGGGgCuCCGGc -5'
9196 3' -68.3 NC_002512.2 + 85181 0.66 0.521338
Target:  5'- aCCCAGGcGCgaCGGGu-CCCCGuGGGUCGc -3'
miRNA:   3'- cGGGUCC-CG--GCCCcuGGGGC-UCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 118792 0.66 0.521338
Target:  5'- cGCCgggCGGGaGCUGuGGGcCCCCGucguGGUCGg -3'
miRNA:   3'- -CGG---GUCC-CGGC-CCCuGGGGCu---CCGGC- -5'
9196 3' -68.3 NC_002512.2 + 14478 0.66 0.521338
Target:  5'- cGCCCuuGGGCCaGGGcagggcgaACauggugCCGGGGCUGg -3'
miRNA:   3'- -CGGGu-CCCGGcCCC--------UGg-----GGCUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 184794 0.66 0.521338
Target:  5'- gGCCCGGGccuccGCgGGGaGACCCUuccgcgccGGCCGc -3'
miRNA:   3'- -CGGGUCC-----CGgCCC-CUGGGGcu------CCGGC- -5'
9196 3' -68.3 NC_002512.2 + 143520 0.66 0.521338
Target:  5'- cUCCAGGGCgCGccuGGcGGCCUCGucGCCGu -3'
miRNA:   3'- cGGGUCCCG-GC---CC-CUGGGGCucCGGC- -5'
9196 3' -68.3 NC_002512.2 + 211188 0.66 0.521338
Target:  5'- cGCCCu--GCuCGGGGugCCCGccGCCc -3'
miRNA:   3'- -CGGGuccCG-GCCCCugGGGCucCGGc -5'
9196 3' -68.3 NC_002512.2 + 146801 0.66 0.5161
Target:  5'- aCCCGGaggaGGCCcGGGACCUggagaccuucgcgcgCGAGGUCGc -3'
miRNA:   3'- cGGGUC----CCGGcCCCUGGG---------------GCUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 101462 0.66 0.51262
Target:  5'- cGCCCgcgaggAGGGCucCGGcGACCCCGccaccGGGCuCGa -3'
miRNA:   3'- -CGGG------UCCCG--GCCcCUGGGGC-----UCCG-GC- -5'
9196 3' -68.3 NC_002512.2 + 29554 0.66 0.51262
Target:  5'- cGCCgaCAGGaggacGCCGGcGGGaagccgcuCCCCGAGGgCGg -3'
miRNA:   3'- -CGG--GUCC-----CGGCC-CCU--------GGGGCUCCgGC- -5'
9196 3' -68.3 NC_002512.2 + 108832 0.66 0.51262
Target:  5'- cGCCUcGGGCgGcGGGuACCCggcccaGAGGUCGc -3'
miRNA:   3'- -CGGGuCCCGgC-CCC-UGGGg-----CUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 213005 0.66 0.51262
Target:  5'- gGCCgucGGGCCcGGGGCCCucuCGAGGUg- -3'
miRNA:   3'- -CGGgu-CCCGGcCCCUGGG---GCUCCGgc -5'
9196 3' -68.3 NC_002512.2 + 205570 0.66 0.51262
Target:  5'- aGCCCGaccGCCGGGGgacgcaguucGCCCCGccGCUGu -3'
miRNA:   3'- -CGGGUcc-CGGCCCC----------UGGGGCucCGGC- -5'
9196 3' -68.3 NC_002512.2 + 32161 0.66 0.51262
Target:  5'- cUCCAGGGCCucccGcACCCUGGGGUCGc -3'
miRNA:   3'- cGGGUCCCGGcc--CcUGGGGCUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 8322 0.66 0.511752
Target:  5'- --gCAGGGCCGGGagccggaGACCgCGGGuCCGg -3'
miRNA:   3'- cggGUCCCGGCCC-------CUGGgGCUCcGGC- -5'
9196 3' -68.3 NC_002512.2 + 204974 0.66 0.511752
Target:  5'- aGCCCGacgccgcGGGCgaCGGGGACCggaaggCGGGGgCGa -3'
miRNA:   3'- -CGGGU-------CCCG--GCCCCUGGg-----GCUCCgGC- -5'
9196 3' -68.3 NC_002512.2 + 98957 0.66 0.510017
Target:  5'- aGCUCAGucGGuguCCGGGGACUCCaGAgugcgagccacgauGGCCGg -3'
miRNA:   3'- -CGGGUC--CC---GGCCCCUGGGG-CU--------------CCGGC- -5'
9196 3' -68.3 NC_002512.2 + 108733 0.66 0.503964
Target:  5'- cGCCCuGGGCCGcGGccGGCgUCucGGCCGc -3'
miRNA:   3'- -CGGGuCCCGGC-CC--CUGgGGcuCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 128173 0.66 0.503964
Target:  5'- aGCCCGGGgacgaggucGCCGaGcGGGCCgCCGgcGGGaCCGg -3'
miRNA:   3'- -CGGGUCC---------CGGC-C-CCUGG-GGC--UCC-GGC- -5'
9196 3' -68.3 NC_002512.2 + 220035 0.66 0.503964
Target:  5'- uCUCGGGGuCCGGGcGAUCUCGAcauGGCUc -3'
miRNA:   3'- cGGGUCCC-GGCCC-CUGGGGCU---CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.