miRNA display CGI


Results 1 - 20 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 3' -68.3 NC_002512.2 + 2166 0.66 0.478389
Target:  5'- gGUCgAGGaGUCGGGGAccguaccgcgcCCCCGccGCCGu -3'
miRNA:   3'- -CGGgUCC-CGGCCCCU-----------GGGGCucCGGC- -5'
9196 3' -68.3 NC_002512.2 + 2490 0.68 0.390694
Target:  5'- gGUCCGGgcGGCCuuGGGGAacggaucucCCCCGAcGCCGg -3'
miRNA:   3'- -CGGGUC--CCGG--CCCCU---------GGGGCUcCGGC- -5'
9196 3' -68.3 NC_002512.2 + 2801 0.67 0.429273
Target:  5'- cGgCCGGcGGCCGgcGGGACCCgGcgcGGGCgCGg -3'
miRNA:   3'- -CgGGUC-CCGGC--CCCUGGGgC---UCCG-GC- -5'
9196 3' -68.3 NC_002512.2 + 3311 0.71 0.244259
Target:  5'- cGCCCuccuGGCCGGGGAgCgCGAG-CCGg -3'
miRNA:   3'- -CGGGuc--CCGGCCCCUgGgGCUCcGGC- -5'
9196 3' -68.3 NC_002512.2 + 3592 0.68 0.398227
Target:  5'- cCCCGGGGgucUCGGGGACaggcgcagagCCCGcGGUCGu -3'
miRNA:   3'- cGGGUCCC---GGCCCCUG----------GGGCuCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 4383 0.66 0.478389
Target:  5'- aGCCCGGGacccCCGcGGcGGCCCCGuagaucgcGGUCGa -3'
miRNA:   3'- -CGGGUCCc---GGC-CC-CUGGGGCu-------CCGGC- -5'
9196 3' -68.3 NC_002512.2 + 5188 0.69 0.35445
Target:  5'- gGCCCcagcAGGGCgGGcaGGACCgCG-GGCCa -3'
miRNA:   3'- -CGGG----UCCCGgCC--CCUGGgGCuCCGGc -5'
9196 3' -68.3 NC_002512.2 + 5256 0.66 0.478389
Target:  5'- gGCCgAGGccGCgGcGGcGACCCCGAGcCCGg -3'
miRNA:   3'- -CGGgUCC--CGgC-CC-CUGGGGCUCcGGC- -5'
9196 3' -68.3 NC_002512.2 + 6346 0.73 0.175562
Target:  5'- gGCgCGGGGCCGGcGGGCCgCGGGcgcguGCCGu -3'
miRNA:   3'- -CGgGUCCCGGCC-CCUGGgGCUC-----CGGC- -5'
9196 3' -68.3 NC_002512.2 + 7266 0.69 0.314179
Target:  5'- cGUCCGucGGGaUCGGGcgcgaGGCCCCGGgGGCCGg -3'
miRNA:   3'- -CGGGU--CCC-GGCCC-----CUGGGGCU-CCGGC- -5'
9196 3' -68.3 NC_002512.2 + 8161 0.77 0.105838
Target:  5'- -gCCAGGcGCuCGGGGAUcucggcguagcaCCCGAGGCCGa -3'
miRNA:   3'- cgGGUCC-CG-GCCCCUG------------GGGCUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 8322 0.66 0.511752
Target:  5'- --gCAGGGCCGGGagccggaGACCgCGGGuCCGg -3'
miRNA:   3'- cggGUCCCGGCCC-------CUGGgGCUCcGGC- -5'
9196 3' -68.3 NC_002512.2 + 10166 0.67 0.45347
Target:  5'- gGCaCgGGGGCCGccucucgcGCCCCGAGcGCCGa -3'
miRNA:   3'- -CG-GgUCCCGGCccc-----UGGGGCUC-CGGC- -5'
9196 3' -68.3 NC_002512.2 + 10439 0.68 0.390694
Target:  5'- cGCCgucGGGCaCGGGGGCgCggagGAGGCCGc -3'
miRNA:   3'- -CGGgu-CCCG-GCCCCUGgGg---CUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 10551 0.67 0.448571
Target:  5'- -gCCGGGcaGCCGGcGGGccacgccgacgcucuCCCCGuGGCCGc -3'
miRNA:   3'- cgGGUCC--CGGCC-CCU---------------GGGGCuCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 11287 0.66 0.503102
Target:  5'- aGUCCGcGGGCgagacccCGGGGAgacCUCCGAgagauGGCCGa -3'
miRNA:   3'- -CGGGU-CCCG-------GCCCCU---GGGGCU-----CCGGC- -5'
9196 3' -68.3 NC_002512.2 + 11456 0.67 0.41357
Target:  5'- -aCgGGGGCCGGGGAaggggcggagaCCgCGAGGaCGa -3'
miRNA:   3'- cgGgUCCCGGCCCCU-----------GGgGCUCCgGC- -5'
9196 3' -68.3 NC_002512.2 + 11594 1.09 0.000443
Target:  5'- cGCCCAGGGCCGGGGACCCCGAGGCCGa -3'
miRNA:   3'- -CGGGUCCCGGCCCCUGGGGCUCCGGC- -5'
9196 3' -68.3 NC_002512.2 + 11684 0.69 0.347492
Target:  5'- gGCCCGaGG-CGGGGGCCCgaGGGGCg- -3'
miRNA:   3'- -CGGGUcCCgGCCCCUGGGg-CUCCGgc -5'
9196 3' -68.3 NC_002512.2 + 13307 0.66 0.495371
Target:  5'- aCCCAGGGCCu--GGCCUCGcuGGCCc -3'
miRNA:   3'- cGGGUCCCGGcccCUGGGGCu-CCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.