miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 198154 0.66 0.855734
Target:  5'- cGCGcGGgccgGGucGGCGCCGGCCggCGGAc -3'
miRNA:   3'- aUGUaCCa---CCucCUGCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 223184 0.69 0.689907
Target:  5'- gUACGUGGacgGGccgcccgacgGGGACGgCGuCCCGGAg -3'
miRNA:   3'- -AUGUACCa--CC----------UCCUGCgGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226378 0.69 0.699495
Target:  5'- gGCucgGGUGGAGGGcCGacgaCGGCgCCGGGa -3'
miRNA:   3'- aUGua-CCACCUCCU-GCg---GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 189508 0.69 0.718508
Target:  5'- ----aGGUGGA-GACGCUccgGGCCCGGGc -3'
miRNA:   3'- auguaCCACCUcCUGCGG---CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226585 0.69 0.718508
Target:  5'- ----cGGccaGGAGGGCG-CGGCCCGGGg -3'
miRNA:   3'- auguaCCa--CCUCCUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 227311 0.68 0.727919
Target:  5'- aGCAUGGgGGAGacGCGCCGgcGCCCGaGGa -3'
miRNA:   3'- aUGUACCaCCUCc-UGCGGC--UGGGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 147684 0.68 0.727919
Target:  5'- cGCcccg-GGAGGACGCCGGCCgacggCGGAc -3'
miRNA:   3'- aUGuaccaCCUCCUGCGGCUGG-----GCCU- -5'
9196 5' -59.5 NC_002512.2 + 219274 0.68 0.727919
Target:  5'- gGCAgGG-GGcGGACGCCGACgCCGuGGc -3'
miRNA:   3'- aUGUaCCaCCuCCUGCGGCUG-GGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 160724 0.68 0.731662
Target:  5'- gACAUcGG-GGGGGauuucggggggaacgGCGCCGGcCCCGGGc -3'
miRNA:   3'- aUGUA-CCaCCUCC---------------UGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 161187 0.68 0.746507
Target:  5'- aACcUGGUGG-GGACGgUGuGCCUGGAg -3'
miRNA:   3'- aUGuACCACCuCCUGCgGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 187022 0.68 0.746507
Target:  5'- gGCGUGGaggaGGAGGACGagGACCgGGc -3'
miRNA:   3'- aUGUACCa---CCUCCUGCggCUGGgCCu -5'
9196 5' -59.5 NC_002512.2 + 219827 0.68 0.755669
Target:  5'- gACAgggGGUcGGucGGGGgGuCCGGCCCGGGg -3'
miRNA:   3'- aUGUa--CCA-CC--UCCUgC-GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 98560 0.67 0.79125
Target:  5'- cGCAgagGGUcGGAcGGcCGuuGAUCCGGAg -3'
miRNA:   3'- aUGUa--CCA-CCU-CCuGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 196493 0.67 0.808293
Target:  5'- cGCcUGGcUGGcGGACGCCGGguucgaCCGGGa -3'
miRNA:   3'- aUGuACC-ACCuCCUGCGGCUg-----GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 204725 0.67 0.808293
Target:  5'- gGCccGGggcGGGGGGC-CgGACCCGGGu -3'
miRNA:   3'- aUGuaCCa--CCUCCUGcGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 207773 0.67 0.808293
Target:  5'- -cCGUGGUGGuugcGGGACGgCGucgucuCCCGGc -3'
miRNA:   3'- auGUACCACC----UCCUGCgGCu-----GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 170827 0.67 0.816601
Target:  5'- gGCAgcGGcGGcAGcGGCGgCGACCCGGAc -3'
miRNA:   3'- aUGUa-CCaCC-UC-CUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 227497 0.66 0.832756
Target:  5'- ----aGGUaGGA-GACGCCgcGACCCGGGg -3'
miRNA:   3'- auguaCCA-CCUcCUGCGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 94804 0.66 0.840589
Target:  5'- gACGcGGagacgcgGGGGGA-GCCGuCCCGGAg -3'
miRNA:   3'- aUGUaCCa------CCUCCUgCGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 121416 0.66 0.863034
Target:  5'- gGCGUGGagGGA-GACGCCcgcggagucGGcCCCGGAg -3'
miRNA:   3'- aUGUACCa-CCUcCUGCGG---------CU-GGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.