miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 153190 0.7 0.660915
Target:  5'- aGCgGUGG-GGAGGGCGgC-ACCCGGGa -3'
miRNA:   3'- aUG-UACCaCCUCCUGCgGcUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 211757 0.7 0.660915
Target:  5'- gGCccGGgcgcugcgGGAGGACGUggaGGCCCGGGu -3'
miRNA:   3'- aUGuaCCa-------CCUCCUGCGg--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 15101 0.7 0.660915
Target:  5'- gACcagGGgacccGGAGGGCGaCCGGCgCCGGAc -3'
miRNA:   3'- aUGua-CCa----CCUCCUGC-GGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 83211 0.7 0.660915
Target:  5'- cGCggGGcgGGGGGAgCGUCGGuCCCGGGg -3'
miRNA:   3'- aUGuaCCa-CCUCCU-GCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 223184 0.69 0.689907
Target:  5'- gUACGUGGacgGGccgcccgacgGGGACGgCGuCCCGGAg -3'
miRNA:   3'- -AUGUACCa--CC----------UCCUGCgGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123272 0.69 0.689907
Target:  5'- cGCAUGucGGAGGACauggagcgccgGCUGGCCCGGu -3'
miRNA:   3'- aUGUACcaCCUCCUG-----------CGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 32076 0.69 0.699495
Target:  5'- gGCA-GG-GGGGGuCGCCGauggcgGCCCGGGu -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGGC------UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226378 0.69 0.699495
Target:  5'- gGCucgGGUGGAGGGcCGacgaCGGCgCCGGGa -3'
miRNA:   3'- aUGua-CCACCUCCU-GCg---GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 137204 0.69 0.71283
Target:  5'- cGCccGGUGGGcggcgcgcccggcgcGGGCgGCCGuCCCGGAu -3'
miRNA:   3'- aUGuaCCACCU---------------CCUG-CGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 106630 0.69 0.718508
Target:  5'- cGCcgGGgGGuAGcGGCGCCGGCUCGGc -3'
miRNA:   3'- aUGuaCCaCC-UC-CUGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 74182 0.69 0.718508
Target:  5'- ----aGGUGGAGG-CGCCGGCacaGGGc -3'
miRNA:   3'- auguaCCACCUCCuGCGGCUGgg-CCU- -5'
9196 5' -59.5 NC_002512.2 + 226585 0.69 0.718508
Target:  5'- ----cGGccaGGAGGGCG-CGGCCCGGGg -3'
miRNA:   3'- auguaCCa--CCUCCUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 189508 0.69 0.718508
Target:  5'- ----aGGUGGA-GACGCUccgGGCCCGGGc -3'
miRNA:   3'- auguaCCACCUcCUGCGG---CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 227311 0.68 0.727919
Target:  5'- aGCAUGGgGGAGacGCGCCGgcGCCCGaGGa -3'
miRNA:   3'- aUGUACCaCCUCc-UGCGGC--UGGGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 147684 0.68 0.727919
Target:  5'- cGCcccg-GGAGGACGCCGGCCgacggCGGAc -3'
miRNA:   3'- aUGuaccaCCUCCUGCGGCUGG-----GCCU- -5'
9196 5' -59.5 NC_002512.2 + 219274 0.68 0.727919
Target:  5'- gGCAgGG-GGcGGACGCCGACgCCGuGGc -3'
miRNA:   3'- aUGUaCCaCCuCCUGCGGCUG-GGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 160724 0.68 0.731662
Target:  5'- gACAUcGG-GGGGGauuucggggggaacgGCGCCGGcCCCGGGc -3'
miRNA:   3'- aUGUA-CCaCCUCC---------------UGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 153742 0.68 0.737254
Target:  5'- -cCGUGG-GGGGGugGUCGAaUCGGAc -3'
miRNA:   3'- auGUACCaCCUCCugCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 45326 0.68 0.737254
Target:  5'- cGCG-GGUcGGAGGGCcguccGCCGGCCCGc- -3'
miRNA:   3'- aUGUaCCA-CCUCCUG-----CGGCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 161187 0.68 0.746507
Target:  5'- aACcUGGUGG-GGACGgUGuGCCUGGAg -3'
miRNA:   3'- aUGuACCACCuCCUGCgGC-UGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.