miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 74182 0.69 0.718508
Target:  5'- ----aGGUGGAGG-CGCCGGCacaGGGc -3'
miRNA:   3'- auguaCCACCUCCuGCGGCUGgg-CCU- -5'
9196 5' -59.5 NC_002512.2 + 75548 0.73 0.45345
Target:  5'- -cCGUGGcGGAGGACGaCGACgCGGAc -3'
miRNA:   3'- auGUACCaCCUCCUGCgGCUGgGCCU- -5'
9196 5' -59.5 NC_002512.2 + 79739 0.66 0.84825
Target:  5'- gACG-GGcUGGcGGACGCCGACacgagCGGGg -3'
miRNA:   3'- aUGUaCC-ACCuCCUGCGGCUGg----GCCU- -5'
9196 5' -59.5 NC_002512.2 + 80912 0.68 0.755669
Target:  5'- cAgGUGGUGGGucgcgcGGGCGCCcuCCCGGc -3'
miRNA:   3'- aUgUACCACCU------CCUGCGGcuGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 83211 0.7 0.660915
Target:  5'- cGCggGGcgGGGGGAgCGUCGGuCCCGGGg -3'
miRNA:   3'- aUGuaCCa-CCUCCU-GCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 86121 0.72 0.516694
Target:  5'- gGCGcGGaGGAGGuCGCgGACCUGGAa -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 87104 0.66 0.870146
Target:  5'- gUGC-UGG-GGAGGugGCgGAacauCUCGGAg -3'
miRNA:   3'- -AUGuACCaCCUCCugCGgCU----GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 90954 0.66 0.863034
Target:  5'- -uCGUGGUGGuGG-UGCuCGugCUGGGa -3'
miRNA:   3'- auGUACCACCuCCuGCG-GCugGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 94804 0.66 0.840589
Target:  5'- gACGcGGagacgcgGGGGGA-GCCGuCCCGGAg -3'
miRNA:   3'- aUGUaCCa------CCUCCUgCGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 98560 0.67 0.79125
Target:  5'- cGCAgagGGUcGGAcGGcCGuuGAUCCGGAg -3'
miRNA:   3'- aUGUa--CCA-CCU-CCuGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 99881 0.66 0.855734
Target:  5'- gUGC-UGGaccgGGAGGAgGCgCGGCCCGu- -3'
miRNA:   3'- -AUGuACCa---CCUCCUgCG-GCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 100092 0.76 0.341016
Target:  5'- gGCGgaagGGGGGACuGCCGGCCCGGGa -3'
miRNA:   3'- aUGUaccaCCUCCUG-CGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 102858 0.67 0.805772
Target:  5'- cGCGUaucccgaccgGGGGGACGCCuacggggGACCCGGGu -3'
miRNA:   3'- aUGUAcca-------CCUCCUGCGG-------CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 104137 0.71 0.592856
Target:  5'- cACGgacgGGcUGGGGGACG-CGACgCCGGAc -3'
miRNA:   3'- aUGUa---CC-ACCUCCUGCgGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 106630 0.69 0.718508
Target:  5'- cGCcgGGgGGuAGcGGCGCCGGCUCGGc -3'
miRNA:   3'- aUGuaCCaCC-UC-CUGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 121416 0.66 0.863034
Target:  5'- gGCGUGGagGGA-GACGCCcgcggagucGGcCCCGGAg -3'
miRNA:   3'- aUGUACCa-CCUcCUGCGG---------CU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123272 0.69 0.689907
Target:  5'- cGCAUGucGGAGGACauggagcgccgGCUGGCCCGGu -3'
miRNA:   3'- aUGUACcaCCUCCUG-----------CGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 123850 0.75 0.386663
Target:  5'- cUGCGUGGcgGaGAGGACGCCGcaccCCCGGc -3'
miRNA:   3'- -AUGUACCa-C-CUCCUGCGGCu---GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 124771 0.73 0.480068
Target:  5'- gACG-GGUGcGAGGGCuGCCggGACCCGGGg -3'
miRNA:   3'- aUGUaCCAC-CUCCUG-CGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 129172 0.68 0.755669
Target:  5'- cUGCGUGGUGGucuuccaGCaGACCCGGAc -3'
miRNA:   3'- -AUGUACCACCuccug--CGgCUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.