miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 58877 0.7 0.621996
Target:  5'- gUACAcUGGcGGAGGAaagcggcguguCGCCGACCgaCGGAg -3'
miRNA:   3'- -AUGU-ACCaCCUCCU-----------GCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 139980 0.67 0.816601
Target:  5'- cUGCAucgucUGcGUGG-GGuCGCCGACCCaGAc -3'
miRNA:   3'- -AUGU-----AC-CACCuCCuGCGGCUGGGcCU- -5'
9196 5' -59.5 NC_002512.2 + 68000 0.67 0.807454
Target:  5'- cGCGaGGagagGGAGcGACGagacgcaCCGACCCGGGa -3'
miRNA:   3'- aUGUaCCa---CCUC-CUGC-------GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 43370 0.68 0.746507
Target:  5'- cGCAga--GGucGACGCUGGCCCGGAc -3'
miRNA:   3'- aUGUaccaCCucCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 106630 0.69 0.718508
Target:  5'- cGCcgGGgGGuAGcGGCGCCGGCUCGGc -3'
miRNA:   3'- aUGuaCCaCC-UC-CUGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 131046 0.66 0.84825
Target:  5'- cGCG-GG-GGAGGACGgCGccGCgCCGGAg -3'
miRNA:   3'- aUGUaCCaCCUCCUGCgGC--UG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228068 0.67 0.824758
Target:  5'- aGCAggGGUGGGGGgaGCGUgGAUgUGGAa -3'
miRNA:   3'- aUGUa-CCACCUCC--UGCGgCUGgGCCU- -5'
9196 5' -59.5 NC_002512.2 + 137204 0.69 0.71283
Target:  5'- cGCccGGUGGGcggcgcgcccggcgcGGGCgGCCGuCCCGGAu -3'
miRNA:   3'- aUGuaCCACCU---------------CCUG-CGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 80912 0.68 0.755669
Target:  5'- cAgGUGGUGGGucgcgcGGGCGCCcuCCCGGc -3'
miRNA:   3'- aUgUACCACCU------CCUGCGGcuGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 10449 0.68 0.755669
Target:  5'- cACggGGgcgcGGAGGAggccgcCGCCGcCCCGGGc -3'
miRNA:   3'- aUGuaCCa---CCUCCU------GCGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123272 0.69 0.689907
Target:  5'- cGCAUGucGGAGGACauggagcgccgGCUGGCCCGGu -3'
miRNA:   3'- aUGUACcaCCUCCUG-----------CGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 32076 0.69 0.699495
Target:  5'- gGCA-GG-GGGGGuCGCCGauggcgGCCCGGGu -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGGC------UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 22057 0.66 0.855734
Target:  5'- cGCcgGGaucgGGA-GACGCCGAgUCGGGg -3'
miRNA:   3'- aUGuaCCa---CCUcCUGCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 99881 0.66 0.855734
Target:  5'- gUGC-UGGaccgGGAGGAgGCgCGGCCCGu- -3'
miRNA:   3'- -AUGuACCa---CCUCCUgCG-GCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 102858 0.67 0.805772
Target:  5'- cGCGUaucccgaccgGGGGGACGCCuacggggGACCCGGGu -3'
miRNA:   3'- aUGUAcca-------CCUCCUGCGG-------CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 45326 0.68 0.737254
Target:  5'- cGCG-GGUcGGAGGGCcguccGCCGGCCCGc- -3'
miRNA:   3'- aUGUaCCA-CCUCCUG-----CGGCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 74182 0.69 0.718508
Target:  5'- ----aGGUGGAGG-CGCCGGCacaGGGc -3'
miRNA:   3'- auguaCCACCUCCuGCGGCUGgg-CCU- -5'
9196 5' -59.5 NC_002512.2 + 83211 0.7 0.660915
Target:  5'- cGCggGGcgGGGGGAgCGUCGGuCCCGGGg -3'
miRNA:   3'- aUGuaCCa-CCUCCU-GCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 2806 0.68 0.746507
Target:  5'- gGCGgccGGcgGGAcccggcgcGGGCGCgGGCCCGGAc -3'
miRNA:   3'- aUGUa--CCa-CCU--------CCUGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 129172 0.68 0.755669
Target:  5'- cUGCGUGGUGGucuuccaGCaGACCCGGAc -3'
miRNA:   3'- -AUGUACCACCuccug--CGgCUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.