miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 170827 0.67 0.816601
Target:  5'- gGCAgcGGcGGcAGcGGCGgCGACCCGGAc -3'
miRNA:   3'- aUGUa-CCaCC-UC-CUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 207773 0.67 0.808293
Target:  5'- -cCGUGGUGGuugcGGGACGgCGucgucuCCCGGc -3'
miRNA:   3'- auGUACCACC----UCCUGCgGCu-----GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 204725 0.67 0.808293
Target:  5'- gGCccGGggcGGGGGGC-CgGACCCGGGu -3'
miRNA:   3'- aUGuaCCa--CCUCCUGcGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 196493 0.67 0.808293
Target:  5'- cGCcUGGcUGGcGGACGCCGGguucgaCCGGGa -3'
miRNA:   3'- aUGuACC-ACCuCCUGCGGCUg-----GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 219827 0.68 0.755669
Target:  5'- gACAgggGGUcGGucGGGGgGuCCGGCCCGGGg -3'
miRNA:   3'- aUGUa--CCA-CC--UCCUgC-GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 187022 0.68 0.746507
Target:  5'- gGCGUGGaggaGGAGGACGagGACCgGGc -3'
miRNA:   3'- aUGUACCa---CCUCCUGCggCUGGgCCu -5'
9196 5' -59.5 NC_002512.2 + 161187 0.68 0.746507
Target:  5'- aACcUGGUGG-GGACGgUGuGCCUGGAg -3'
miRNA:   3'- aUGuACCACCuCCUGCgGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 160724 0.68 0.731662
Target:  5'- gACAUcGG-GGGGGauuucggggggaacgGCGCCGGcCCCGGGc -3'
miRNA:   3'- aUGUA-CCaCCUCC---------------UGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 219274 0.68 0.727919
Target:  5'- gGCAgGG-GGcGGACGCCGACgCCGuGGc -3'
miRNA:   3'- aUGUaCCaCCuCCUGCGGCUG-GGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 227311 0.68 0.727919
Target:  5'- aGCAUGGgGGAGacGCGCCGgcGCCCGaGGa -3'
miRNA:   3'- aUGUACCaCCUCc-UGCGGC--UGGGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 98560 0.67 0.79125
Target:  5'- cGCAgagGGUcGGAcGGcCGuuGAUCCGGAg -3'
miRNA:   3'- aUGUa--CCA-CCU-CCuGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 62723 0.66 0.870146
Target:  5'- cGCGUcgcGGUcgacggccucgcGGGGcACGCCGACCuCGGAg -3'
miRNA:   3'- aUGUA---CCA------------CCUCcUGCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 31686 0.7 0.612267
Target:  5'- gACggGGaGGAGGACGCgGACCUGu- -3'
miRNA:   3'- aUGuaCCaCCUCCUGCGgCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 222389 0.71 0.583186
Target:  5'- gGCAcGGUGGcGGugGCCGgguCCGGAa -3'
miRNA:   3'- aUGUaCCACCuCCugCGGCug-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 134027 0.71 0.55439
Target:  5'- cGCGcGGcccugGGAGGACGCCGccCCCGGc -3'
miRNA:   3'- aUGUaCCa----CCUCCUGCGGCu-GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 137049 0.72 0.544881
Target:  5'- gACcgGGgacggccagGGAGGagGCGCCGcGCCCGGGa -3'
miRNA:   3'- aUGuaCCa--------CCUCC--UGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 31718 0.72 0.544881
Target:  5'- -----cGUGGAGGuccgccggccgGCGCCGACCCGGc -3'
miRNA:   3'- auguacCACCUCC-----------UGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 86121 0.72 0.516694
Target:  5'- gGCGcGGaGGAGGuCGCgGACCUGGAa -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 124771 0.73 0.480068
Target:  5'- gACG-GGUGcGAGGGCuGCCggGACCCGGGg -3'
miRNA:   3'- aUGUaCCAC-CUCCUG-CGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 100092 0.76 0.341016
Target:  5'- gGCGgaagGGGGGACuGCCGGCCCGGGa -3'
miRNA:   3'- aUGUaccaCCUCCUG-CGGCUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.