miRNA display CGI


Results 41 - 60 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 219274 0.68 0.727919
Target:  5'- gGCAgGG-GGcGGACGCCGACgCCGuGGc -3'
miRNA:   3'- aUGUaCCaCCuCCUGCGGCUG-GGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 147684 0.68 0.727919
Target:  5'- cGCcccg-GGAGGACGCCGGCCgacggCGGAc -3'
miRNA:   3'- aUGuaccaCCUCCUGCGGCUGG-----GCCU- -5'
9196 5' -59.5 NC_002512.2 + 227311 0.68 0.727919
Target:  5'- aGCAUGGgGGAGacGCGCCGgcGCCCGaGGa -3'
miRNA:   3'- aUGUACCaCCUCc-UGCGGC--UGGGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 223184 0.69 0.689907
Target:  5'- gUACGUGGacgGGccgcccgacgGGGACGgCGuCCCGGAg -3'
miRNA:   3'- -AUGUACCa--CC----------UCCUGCgGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226378 0.69 0.699495
Target:  5'- gGCucgGGUGGAGGGcCGacgaCGGCgCCGGGa -3'
miRNA:   3'- aUGua-CCACCUCCU-GCg---GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 189508 0.69 0.718508
Target:  5'- ----aGGUGGA-GACGCUccgGGCCCGGGc -3'
miRNA:   3'- auguaCCACCUcCUGCGG---CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226585 0.69 0.718508
Target:  5'- ----cGGccaGGAGGGCG-CGGCCCGGGg -3'
miRNA:   3'- auguaCCa--CCUCCUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 106630 0.69 0.718508
Target:  5'- cGCcgGGgGGuAGcGGCGCCGGCUCGGc -3'
miRNA:   3'- aUGuaCCaCC-UC-CUGCGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 74182 0.69 0.718508
Target:  5'- ----aGGUGGAGG-CGCCGGCacaGGGc -3'
miRNA:   3'- auguaCCACCUCCuGCGGCUGgg-CCU- -5'
9196 5' -59.5 NC_002512.2 + 137204 0.69 0.71283
Target:  5'- cGCccGGUGGGcggcgcgcccggcgcGGGCgGCCGuCCCGGAu -3'
miRNA:   3'- aUGuaCCACCU---------------CCUG-CGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 32076 0.69 0.699495
Target:  5'- gGCA-GG-GGGGGuCGCCGauggcgGCCCGGGu -3'
miRNA:   3'- aUGUaCCaCCUCCuGCGGC------UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123272 0.69 0.689907
Target:  5'- cGCAUGucGGAGGACauggagcgccgGCUGGCCCGGu -3'
miRNA:   3'- aUGUACcaCCUCCUG-----------CGGCUGGGCCu -5'
9196 5' -59.5 NC_002512.2 + 139282 0.7 0.621996
Target:  5'- cGCggGGgcgaaGGGGGGCGcCCGcCCCGGGg -3'
miRNA:   3'- aUGuaCCa----CCUCCUGC-GGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 83211 0.7 0.660915
Target:  5'- cGCggGGcgGGGGGAgCGUCGGuCCCGGGg -3'
miRNA:   3'- aUGuaCCa-CCUCCU-GCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 15101 0.7 0.660915
Target:  5'- gACcagGGgacccGGAGGGCGaCCGGCgCCGGAc -3'
miRNA:   3'- aUGua-CCa----CCUCCUGC-GGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 218095 0.7 0.631733
Target:  5'- -cCGUGG-GGAagcGGGCGUCGcGCCCGGGg -3'
miRNA:   3'- auGUACCaCCU---CCUGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 58877 0.7 0.621996
Target:  5'- gUACAcUGGcGGAGGAaagcggcguguCGCCGACCgaCGGAg -3'
miRNA:   3'- -AUGU-ACCaCCUCCU-----------GCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 31686 0.7 0.612267
Target:  5'- gACggGGaGGAGGACGCgGACCUGu- -3'
miRNA:   3'- aUGuaCCaCCUCCUGCGgCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 153190 0.7 0.660915
Target:  5'- aGCgGUGG-GGAGGGCGgC-ACCCGGGa -3'
miRNA:   3'- aUG-UACCaCCUCCUGCgGcUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 211757 0.7 0.660915
Target:  5'- gGCccGGgcgcugcgGGAGGACGUggaGGCCCGGGu -3'
miRNA:   3'- aUGuaCCa-------CCUCCUGCGg--CUGGGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.