miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 130695 0.66 0.855734
Target:  5'- -uCGUGGUGGGGccCGCCG-CCCGc- -3'
miRNA:   3'- auGUACCACCUCcuGCGGCuGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 131046 0.66 0.84825
Target:  5'- cGCG-GG-GGAGGACGgCGccGCgCCGGAg -3'
miRNA:   3'- aUGUaCCaCCUCCUGCgGC--UG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 134027 0.71 0.55439
Target:  5'- cGCGcGGcccugGGAGGACGCCGccCCCGGc -3'
miRNA:   3'- aUGUaCCa----CCUCCUGCGGCu-GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 136069 0.67 0.79984
Target:  5'- uUGCGUGGguccGGccGGGGgGCCGGCUgCGGAc -3'
miRNA:   3'- -AUGUACCa---CC--UCCUgCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 137049 0.72 0.544881
Target:  5'- gACcgGGgacggccagGGAGGagGCGCCGcGCCCGGGa -3'
miRNA:   3'- aUGuaCCa--------CCUCC--UGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 137204 0.69 0.71283
Target:  5'- cGCccGGUGGGcggcgcgcccggcgcGGGCgGCCGuCCCGGAu -3'
miRNA:   3'- aUGuaCCACCU---------------CCUG-CGGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 139175 0.68 0.773688
Target:  5'- cACAUGGUGGAccccugucACGCCGACgCCGu- -3'
miRNA:   3'- aUGUACCACCUcc------UGCGGCUG-GGCcu -5'
9196 5' -59.5 NC_002512.2 + 139282 0.7 0.621996
Target:  5'- cGCggGGgcgaaGGGGGGCGcCCGcCCCGGGg -3'
miRNA:   3'- aUGuaCCa----CCUCCUGC-GGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 139980 0.67 0.816601
Target:  5'- cUGCAucgucUGcGUGG-GGuCGCCGACCCaGAc -3'
miRNA:   3'- -AUGU-----AC-CACCuCCuGCGGCUGGGcCU- -5'
9196 5' -59.5 NC_002512.2 + 147684 0.68 0.727919
Target:  5'- cGCcccg-GGAGGACGCCGGCCgacggCGGAc -3'
miRNA:   3'- aUGuaccaCCUCCUGCGGCUGG-----GCCU- -5'
9196 5' -59.5 NC_002512.2 + 153190 0.7 0.660915
Target:  5'- aGCgGUGG-GGAGGGCGgC-ACCCGGGa -3'
miRNA:   3'- aUG-UACCaCCUCCUGCgGcUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 153742 0.68 0.737254
Target:  5'- -cCGUGG-GGGGGugGUCGAaUCGGAc -3'
miRNA:   3'- auGUACCaCCUCCugCGGCUgGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 160724 0.68 0.731662
Target:  5'- gACAUcGG-GGGGGauuucggggggaacgGCGCCGGcCCCGGGc -3'
miRNA:   3'- aUGUA-CCaCCUCC---------------UGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 161187 0.68 0.746507
Target:  5'- aACcUGGUGG-GGACGgUGuGCCUGGAg -3'
miRNA:   3'- aUGuACCACCuCCUGCgGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 170827 0.67 0.816601
Target:  5'- gGCAgcGGcGGcAGcGGCGgCGACCCGGAc -3'
miRNA:   3'- aUGUa-CCaCC-UC-CUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 185037 0.73 0.492749
Target:  5'- ----cGG-GGAgagcccuaggauccuGGACGCCGACCCGGGc -3'
miRNA:   3'- auguaCCaCCU---------------CCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 187022 0.68 0.746507
Target:  5'- gGCGUGGaggaGGAGGACGagGACCgGGc -3'
miRNA:   3'- aUGUACCa---CCUCCUGCggCUGGgCCu -5'
9196 5' -59.5 NC_002512.2 + 189508 0.69 0.718508
Target:  5'- ----aGGUGGA-GACGCUccgGGCCCGGGc -3'
miRNA:   3'- auguaCCACCUcCUGCGG---CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 196493 0.67 0.808293
Target:  5'- cGCcUGGcUGGcGGACGCCGGguucgaCCGGGa -3'
miRNA:   3'- aUGuACC-ACCuCCUGCGGCUg-----GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 198154 0.66 0.855734
Target:  5'- cGCGcGGgccgGGucGGCGCCGGCCggCGGAc -3'
miRNA:   3'- aUGUaCCa---CCucCUGCGGCUGG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.