miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 87104 0.66 0.870146
Target:  5'- gUGC-UGG-GGAGGugGCgGAacauCUCGGAg -3'
miRNA:   3'- -AUGuACCaCCUCCugCGgCU----GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 62723 0.66 0.870146
Target:  5'- cGCGUcgcGGUcgacggccucgcGGGGcACGCCGACCuCGGAg -3'
miRNA:   3'- aUGUA---CCA------------CCUCcUGCGGCUGG-GCCU- -5'
9196 5' -59.5 NC_002512.2 + 2298 0.66 0.84825
Target:  5'- cUGCG-GGUGGcGGGgcucugcuGCGCCGGCgguCCGGAg -3'
miRNA:   3'- -AUGUaCCACC-UCC--------UGCGGCUG---GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 99881 0.66 0.855734
Target:  5'- gUGC-UGGaccgGGAGGAgGCgCGGCCCGu- -3'
miRNA:   3'- -AUGuACCa---CCUCCUgCG-GCUGGGCcu -5'
9196 5' -59.5 NC_002512.2 + 90954 0.66 0.863034
Target:  5'- -uCGUGGUGGuGG-UGCuCGugCUGGGa -3'
miRNA:   3'- auGUACCACCuCCuGCG-GCugGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 207773 0.67 0.808293
Target:  5'- -cCGUGGUGGuugcGGGACGgCGucgucuCCCGGc -3'
miRNA:   3'- auGUACCACC----UCCUGCgGCu-----GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 170827 0.67 0.816601
Target:  5'- gGCAgcGGcGGcAGcGGCGgCGACCCGGAc -3'
miRNA:   3'- aUGUa-CCaCC-UC-CUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 198154 0.66 0.855734
Target:  5'- cGCGcGGgccgGGucGGCGCCGGCCggCGGAc -3'
miRNA:   3'- aUGUaCCa---CCucCUGCGGCUGG--GCCU- -5'
9196 5' -59.5 NC_002512.2 + 187022 0.68 0.746507
Target:  5'- gGCGUGGaggaGGAGGACGagGACCgGGc -3'
miRNA:   3'- aUGUACCa---CCUCCUGCggCUGGgCCu -5'
9196 5' -59.5 NC_002512.2 + 161187 0.68 0.746507
Target:  5'- aACcUGGUGG-GGACGgUGuGCCUGGAg -3'
miRNA:   3'- aUGuACCACCuCCUGCgGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 160724 0.68 0.731662
Target:  5'- gACAUcGG-GGGGGauuucggggggaacgGCGCCGGcCCCGGGc -3'
miRNA:   3'- aUGUA-CCaCCUCC---------------UGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 219274 0.68 0.727919
Target:  5'- gGCAgGG-GGcGGACGCCGACgCCGuGGc -3'
miRNA:   3'- aUGUaCCaCCuCCUGCGGCUG-GGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 226378 0.69 0.699495
Target:  5'- gGCucgGGUGGAGGGcCGacgaCGGCgCCGGGa -3'
miRNA:   3'- aUGua-CCACCUCCU-GCg---GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 218095 0.7 0.631733
Target:  5'- -cCGUGG-GGAagcGGGCGUCGcGCCCGGGg -3'
miRNA:   3'- auGUACCaCCU---CCUGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 201731 0.7 0.621996
Target:  5'- cGCggGG-GGAgacgacggcugGGGCGCCGAuCCCGGGg -3'
miRNA:   3'- aUGuaCCaCCU-----------CCUGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228283 0.71 0.602551
Target:  5'- cGgGUGGgagagGGAGGACGg-GACCCGGGg -3'
miRNA:   3'- aUgUACCa----CCUCCUGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 104137 0.71 0.592856
Target:  5'- cACGgacgGGcUGGGGGACG-CGACgCCGGAc -3'
miRNA:   3'- aUGUa---CC-ACCUCCUGCgGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 7084 0.71 0.58222
Target:  5'- cGCAUGGUGGAGccuaucaagguucGACGCCGgcaGCuuGGu -3'
miRNA:   3'- aUGUACCACCUC-------------CUGCGGC---UGggCCu -5'
9196 5' -59.5 NC_002512.2 + 185037 0.73 0.492749
Target:  5'- ----cGG-GGAgagcccuaggauccuGGACGCCGACCCGGGc -3'
miRNA:   3'- auguaCCaCCU---------------CCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 75548 0.73 0.45345
Target:  5'- -cCGUGGcGGAGGACGaCGACgCGGAc -3'
miRNA:   3'- auGUACCaCCUCCUGCgGCUGgGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.