miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 201731 0.7 0.621996
Target:  5'- cGCggGG-GGAgacgacggcugGGGCGCCGAuCCCGGGg -3'
miRNA:   3'- aUGuaCCaCCU-----------CCUGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 204725 0.67 0.808293
Target:  5'- gGCccGGggcGGGGGGC-CgGACCCGGGu -3'
miRNA:   3'- aUGuaCCa--CCUCCUGcGgCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 207773 0.67 0.808293
Target:  5'- -cCGUGGUGGuugcGGGACGgCGucgucuCCCGGc -3'
miRNA:   3'- auGUACCACC----UCCUGCgGCu-----GGGCCu -5'
9196 5' -59.5 NC_002512.2 + 211757 0.7 0.660915
Target:  5'- gGCccGGgcgcugcgGGAGGACGUggaGGCCCGGGu -3'
miRNA:   3'- aUGuaCCa-------CCUCCUGCGg--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 218095 0.7 0.631733
Target:  5'- -cCGUGG-GGAagcGGGCGUCGcGCCCGGGg -3'
miRNA:   3'- auGUACCaCCU---CCUGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 219274 0.68 0.727919
Target:  5'- gGCAgGG-GGcGGACGCCGACgCCGuGGc -3'
miRNA:   3'- aUGUaCCaCCuCCUGCGGCUG-GGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 219827 0.68 0.755669
Target:  5'- gACAgggGGUcGGucGGGGgGuCCGGCCCGGGg -3'
miRNA:   3'- aUGUa--CCA-CC--UCCUgC-GGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 222389 0.71 0.583186
Target:  5'- gGCAcGGUGGcGGugGCCGgguCCGGAa -3'
miRNA:   3'- aUGUaCCACCuCCugCGGCug-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 223184 0.69 0.689907
Target:  5'- gUACGUGGacgGGccgcccgacgGGGACGgCGuCCCGGAg -3'
miRNA:   3'- -AUGUACCa--CC----------UCCUGCgGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226378 0.69 0.699495
Target:  5'- gGCucgGGUGGAGGGcCGacgaCGGCgCCGGGa -3'
miRNA:   3'- aUGua-CCACCUCCU-GCg---GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226467 0.74 0.436157
Target:  5'- cGCGaGGcgGGAGGAgGCCGggGCCCGGGc -3'
miRNA:   3'- aUGUaCCa-CCUCCUgCGGC--UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226585 0.69 0.718508
Target:  5'- ----cGGccaGGAGGGCG-CGGCCCGGGg -3'
miRNA:   3'- auguaCCa--CCUCCUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 227311 0.68 0.727919
Target:  5'- aGCAUGGgGGAGacGCGCCGgcGCCCGaGGa -3'
miRNA:   3'- aUGUACCaCCUCc-UGCGGC--UGGGC-CU- -5'
9196 5' -59.5 NC_002512.2 + 227497 0.66 0.832756
Target:  5'- ----aGGUaGGA-GACGCCgcGACCCGGGg -3'
miRNA:   3'- auguaCCA-CCUcCUGCGG--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228068 0.67 0.824758
Target:  5'- aGCAggGGUGGGGGgaGCGUgGAUgUGGAa -3'
miRNA:   3'- aUGUa-CCACCUCC--UGCGgCUGgGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228283 0.71 0.602551
Target:  5'- cGgGUGGgagagGGAGGACGg-GACCCGGGg -3'
miRNA:   3'- aUgUACCa----CCUCCUGCggCUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.