miRNA display CGI


Results 61 - 76 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9196 5' -59.5 NC_002512.2 + 121416 0.66 0.863034
Target:  5'- gGCGUGGagGGA-GACGCCcgcggagucGGcCCCGGAg -3'
miRNA:   3'- aUGUACCa-CCUcCUGCGG---------CU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226585 0.69 0.718508
Target:  5'- ----cGGccaGGAGGGCG-CGGCCCGGGg -3'
miRNA:   3'- auguaCCa--CCUCCUGCgGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 189508 0.69 0.718508
Target:  5'- ----aGGUGGA-GACGCUccgGGCCCGGGc -3'
miRNA:   3'- auguaCCACCUcCUGCGG---CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226378 0.69 0.699495
Target:  5'- gGCucgGGUGGAGGGcCGacgaCGGCgCCGGGa -3'
miRNA:   3'- aUGua-CCACCUCCU-GCg---GCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 223184 0.69 0.689907
Target:  5'- gUACGUGGacgGGccgcccgacgGGGACGgCGuCCCGGAg -3'
miRNA:   3'- -AUGUACCa--CC----------UCCUGCgGCuGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 153190 0.7 0.660915
Target:  5'- aGCgGUGG-GGAGGGCGgC-ACCCGGGa -3'
miRNA:   3'- aUG-UACCaCCUCCUGCgGcUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 211757 0.7 0.660915
Target:  5'- gGCccGGgcgcugcgGGAGGACGUggaGGCCCGGGu -3'
miRNA:   3'- aUGuaCCa-------CCUCCUGCGg--CUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 218095 0.7 0.631733
Target:  5'- -cCGUGG-GGAagcGGGCGUCGcGCCCGGGg -3'
miRNA:   3'- auGUACCaCCU---CCUGCGGC-UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 201731 0.7 0.621996
Target:  5'- cGCggGG-GGAgacgacggcugGGGCGCCGAuCCCGGGg -3'
miRNA:   3'- aUGuaCCaCCU-----------CCUGCGGCU-GGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 228283 0.71 0.602551
Target:  5'- cGgGUGGgagagGGAGGACGg-GACCCGGGg -3'
miRNA:   3'- aUgUACCa----CCUCCUGCggCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 104137 0.71 0.592856
Target:  5'- cACGgacgGGcUGGGGGACG-CGACgCCGGAc -3'
miRNA:   3'- aUGUa---CC-ACCUCCUGCgGCUG-GGCCU- -5'
9196 5' -59.5 NC_002512.2 + 7084 0.71 0.58222
Target:  5'- cGCAUGGUGGAGccuaucaagguucGACGCCGgcaGCuuGGu -3'
miRNA:   3'- aUGUACCACCUC-------------CUGCGGC---UGggCCu -5'
9196 5' -59.5 NC_002512.2 + 185037 0.73 0.492749
Target:  5'- ----cGG-GGAgagcccuaggauccuGGACGCCGACCCGGGc -3'
miRNA:   3'- auguaCCaCCU---------------CCUGCGGCUGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 75548 0.73 0.45345
Target:  5'- -cCGUGGcGGAGGACGaCGACgCGGAc -3'
miRNA:   3'- auGUACCaCCUCCUGCgGCUGgGCCU- -5'
9196 5' -59.5 NC_002512.2 + 226467 0.74 0.436157
Target:  5'- cGCGaGGcgGGAGGAgGCCGggGCCCGGGc -3'
miRNA:   3'- aUGUaCCa-CCUCCUgCGGC--UGGGCCU- -5'
9196 5' -59.5 NC_002512.2 + 123850 0.75 0.386663
Target:  5'- cUGCGUGGcgGaGAGGACGCCGcaccCCCGGc -3'
miRNA:   3'- -AUGUACCa-C-CUCCUGCGGCu---GGGCCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.