miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9197 3' -65.7 NC_002512.2 + 224247 0.66 0.630797
Target:  5'- -gCGgGGGAggCGGguCGGCGCCcgacgCCCGCg -3'
miRNA:   3'- cgGCgUCCUgaGCC--GCCGCGG-----GGGCG- -5'
9197 3' -65.7 NC_002512.2 + 115700 0.66 0.630797
Target:  5'- gGCCGCcGGGCcCGacgcCGGCGCCaCCGa -3'
miRNA:   3'- -CGGCGuCCUGaGCc---GCCGCGGgGGCg -5'
9197 3' -65.7 NC_002512.2 + 40230 0.66 0.630797
Target:  5'- gGCCGaCGccGGugUCGGC-GCGUCCcgacgaagccgaCCGCg -3'
miRNA:   3'- -CGGC-GU--CCugAGCCGcCGCGGG------------GGCG- -5'
9197 3' -65.7 NC_002512.2 + 48205 0.66 0.630797
Target:  5'- cCCGCGGGAUccCGGCcgcggGGCGCgacuaCCUGUa -3'
miRNA:   3'- cGGCGUCCUGa-GCCG-----CCGCGg----GGGCG- -5'
9197 3' -65.7 NC_002512.2 + 81987 0.66 0.630797
Target:  5'- gGCgGCGGGGgcguCUCGGgGGCGgUCgCgGCg -3'
miRNA:   3'- -CGgCGUCCU----GAGCCgCCGCgGG-GgCG- -5'
9197 3' -65.7 NC_002512.2 + 129092 0.66 0.630797
Target:  5'- cCCG-AGGACg-GGCGGCGUCUgCGg -3'
miRNA:   3'- cGGCgUCCUGagCCGCCGCGGGgGCg -5'
9197 3' -65.7 NC_002512.2 + 32847 0.66 0.630797
Target:  5'- gGCUGCAGGAggUGaCGGUGCCgugggugCCGCg -3'
miRNA:   3'- -CGGCGUCCUgaGCcGCCGCGGg------GGCG- -5'
9197 3' -65.7 NC_002512.2 + 75236 0.66 0.630797
Target:  5'- cGUCGCGGuGACgagcgCGGCcGCGUCCCg-- -3'
miRNA:   3'- -CGGCGUC-CUGa----GCCGcCGCGGGGgcg -5'
9197 3' -65.7 NC_002512.2 + 150371 0.66 0.630797
Target:  5'- --aGCGagauGGACUCGGagugagaGGCGUCCCCc- -3'
miRNA:   3'- cggCGU----CCUGAGCCg------CCGCGGGGGcg -5'
9197 3' -65.7 NC_002512.2 + 180653 0.66 0.630797
Target:  5'- uGCgGCAGGcCgccGCGGUGgCCCCGa -3'
miRNA:   3'- -CGgCGUCCuGagcCGCCGCgGGGGCg -5'
9197 3' -65.7 NC_002512.2 + 120878 0.66 0.630797
Target:  5'- uCCGCAGGACgacgcCGcCGGCGCCgaCGa -3'
miRNA:   3'- cGGCGUCCUGa----GCcGCCGCGGggGCg -5'
9197 3' -65.7 NC_002512.2 + 218214 0.66 0.630797
Target:  5'- cCCGCcucGGGCcgCGGCGG-GCCgCgGCg -3'
miRNA:   3'- cGGCGu--CCUGa-GCCGCCgCGGgGgCG- -5'
9197 3' -65.7 NC_002512.2 + 97675 0.66 0.62987
Target:  5'- -gCGCGGGACaucaacaUCGGCcugacGGUGCUgCUGCu -3'
miRNA:   3'- cgGCGUCCUG-------AGCCG-----CCGCGGgGGCG- -5'
9197 3' -65.7 NC_002512.2 + 155835 0.66 0.62987
Target:  5'- uCCGCucccgggAGGGCUUcaaGGUGCCCCUGUa -3'
miRNA:   3'- cGGCG-------UCCUGAGccgCCGCGGGGGCG- -5'
9197 3' -65.7 NC_002512.2 + 157159 0.66 0.62987
Target:  5'- gGCgGCGGGccgggcgGCgugggCGGCGGCGCgacgaucgaCCGCa -3'
miRNA:   3'- -CGgCGUCC-------UGa----GCCGCCGCGgg-------GGCG- -5'
9197 3' -65.7 NC_002512.2 + 211853 0.66 0.62987
Target:  5'- gGCCGaggagaAGGACcucagcaUCGuCGGCGCCCUggaGCg -3'
miRNA:   3'- -CGGCg-----UCCUG-------AGCcGCCGCGGGGg--CG- -5'
9197 3' -65.7 NC_002512.2 + 6191 0.66 0.62987
Target:  5'- cGCCGgcCAGGACgaugccgUUGuCGGCGCCCuuGg -3'
miRNA:   3'- -CGGC--GUCCUG-------AGCcGCCGCGGGggCg -5'
9197 3' -65.7 NC_002512.2 + 227790 0.66 0.628015
Target:  5'- aGCCGCGGccGuaccgcccgcucccGCcCGGCGuggacuccGCGCUCCCGCu -3'
miRNA:   3'- -CGGCGUC--C--------------UGaGCCGC--------CGCGGGGGCG- -5'
9197 3' -65.7 NC_002512.2 + 182426 0.66 0.621524
Target:  5'- cGCCuuGCGGaACUCGGCcucgGCCUCCGCc -3'
miRNA:   3'- -CGG--CGUCcUGAGCCGccg-CGGGGGCG- -5'
9197 3' -65.7 NC_002512.2 + 147929 0.66 0.621524
Target:  5'- cGCC-CGGGGCUCaccGCGcGCcggccccuccGCCCUCGCc -3'
miRNA:   3'- -CGGcGUCCUGAGc--CGC-CG----------CGGGGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.