miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9197 5' -57.2 NC_002512.2 + 98950 0.66 0.924743
Target:  5'- gAUGCagUCGGGCGGg-GAACcggGCCGAc -3'
miRNA:   3'- -UACG--AGCCCGCCgaCUUGuagUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 70234 0.66 0.924743
Target:  5'- -gGCUCGGuGcCGGCgcu-CGUCugCGAg -3'
miRNA:   3'- uaCGAGCC-C-GCCGacuuGUAGugGCU- -5'
9197 5' -57.2 NC_002512.2 + 38447 0.66 0.924743
Target:  5'- -cGCccCGGGCGGagUGAACAUgACUGu -3'
miRNA:   3'- uaCGa-GCCCGCCg-ACUUGUAgUGGCu -5'
9197 5' -57.2 NC_002512.2 + 52805 0.66 0.924213
Target:  5'- -cGCagCGGG-GGCUGAcggacgcGgGUCACCGGc -3'
miRNA:   3'- uaCGa-GCCCgCCGACU-------UgUAGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 111922 0.66 0.921531
Target:  5'- uUGUUCGGGUGcCgGAACAgcuccaggucggcgcUCACCGGg -3'
miRNA:   3'- uACGAGCCCGCcGaCUUGU---------------AGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 179484 0.66 0.919344
Target:  5'- cUGCUUcGGCGGCgu--CGUCGCCa- -3'
miRNA:   3'- uACGAGcCCGCCGacuuGUAGUGGcu -5'
9197 5' -57.2 NC_002512.2 + 82359 0.66 0.919344
Target:  5'- cGUGCggGGGCGGCggagGGugAUgCugCGGc -3'
miRNA:   3'- -UACGagCCCGCCGa---CUugUA-GugGCU- -5'
9197 5' -57.2 NC_002512.2 + 57962 0.66 0.919344
Target:  5'- -cGCggCGGGCgaagagGGCgacGAACcuAUCACCGAg -3'
miRNA:   3'- uaCGa-GCCCG------CCGa--CUUG--UAGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 26698 0.66 0.911987
Target:  5'- cGUGCUgGcGGUgaccuGGCUGGcgucccugaugugcGCGUCGCCGGc -3'
miRNA:   3'- -UACGAgC-CCG-----CCGACU--------------UGUAGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 89675 0.66 0.910234
Target:  5'- gGUGCgaaGGCGGCgGGGCGagauguacggucgugUCGCCGAa -3'
miRNA:   3'- -UACGagcCCGCCGaCUUGU---------------AGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 47833 0.66 0.907867
Target:  5'- -aGgUCGGcGCGGCUGGccgACAUCcugcACCGc -3'
miRNA:   3'- uaCgAGCC-CGCCGACU---UGUAG----UGGCu -5'
9197 5' -57.2 NC_002512.2 + 217786 0.66 0.907269
Target:  5'- -gGgUCGcGGcCGGCUGGcggaucgGCGUCGCCGu -3'
miRNA:   3'- uaCgAGC-CC-GCCGACU-------UGUAGUGGCu -5'
9197 5' -57.2 NC_002512.2 + 83357 0.66 0.901791
Target:  5'- cAUGCUCGGuCGGCgaugUGGACgaucGUCGCgGAg -3'
miRNA:   3'- -UACGAGCCcGCCG----ACUUG----UAGUGgCU- -5'
9197 5' -57.2 NC_002512.2 + 91912 0.66 0.901791
Target:  5'- -cGCUCGGGCccGGCacgcaGGACAUC-CgCGAg -3'
miRNA:   3'- uaCGAGCCCG--CCGa----CUUGUAGuG-GCU- -5'
9197 5' -57.2 NC_002512.2 + 186828 0.66 0.901791
Target:  5'- gGUGcCUCGGcGaGGCccUGcGCGUCGCCGAg -3'
miRNA:   3'- -UAC-GAGCC-CgCCG--ACuUGUAGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 226378 0.66 0.901791
Target:  5'- -gGCUCGGGUggagGGCcGAcgACggCGCCGGg -3'
miRNA:   3'- uaCGAGCCCG----CCGaCU--UGuaGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 155674 0.66 0.895494
Target:  5'- -cGCgUCGGgaccGCGGCccacGGACGUCGCCGc -3'
miRNA:   3'- uaCG-AGCC----CGCCGa---CUUGUAGUGGCu -5'
9197 5' -57.2 NC_002512.2 + 72282 0.67 0.888978
Target:  5'- -aGCggCGuGGCGGC-GAACG-CGCCGGc -3'
miRNA:   3'- uaCGa-GC-CCGCCGaCUUGUaGUGGCU- -5'
9197 5' -57.2 NC_002512.2 + 112708 0.67 0.888978
Target:  5'- -aGCuUCGGGUGGUUGAucagGCAgaaGCCGu -3'
miRNA:   3'- uaCG-AGCCCGCCGACU----UGUag-UGGCu -5'
9197 5' -57.2 NC_002512.2 + 138223 0.67 0.882246
Target:  5'- --uCUCGuaGCGGCUGGAgGUCACCa- -3'
miRNA:   3'- uacGAGCc-CGCCGACUUgUAGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.