miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 3' -62.9 NC_002512.2 + 31244 0.66 0.69794
Target:  5'- uUUCGugaGGGCGCUgauggaCGCGGACgUGUa -3'
miRNA:   3'- -AAGCuggCCCGCGA------GCGCCUGgACGc -5'
9198 3' -62.9 NC_002512.2 + 51069 0.66 0.69794
Target:  5'- -aCGuCCGGGCGCUguCGGACCaacugGCc -3'
miRNA:   3'- aaGCuGGCCCGCGAgcGCCUGGa----CGc -5'
9198 3' -62.9 NC_002512.2 + 221158 0.66 0.69794
Target:  5'- gUCGACgggCGGGCGCgCGCGG-CCgacCGa -3'
miRNA:   3'- aAGCUG---GCCCGCGaGCGCCuGGac-GC- -5'
9198 3' -62.9 NC_002512.2 + 228412 0.66 0.69794
Target:  5'- --gGACgGGGCGCUgGgGGGCggggGCGg -3'
miRNA:   3'- aagCUGgCCCGCGAgCgCCUGga--CGC- -5'
9198 3' -62.9 NC_002512.2 + 155787 0.66 0.69794
Target:  5'- -aCG-CCGGGCaGCUCGUGc-CCUGCc -3'
miRNA:   3'- aaGCuGGCCCG-CGAGCGCcuGGACGc -5'
9198 3' -62.9 NC_002512.2 + 221908 0.66 0.69794
Target:  5'- --gGAUCGGGCGCcagCGCGcgauGGCCUgguGCGg -3'
miRNA:   3'- aagCUGGCCCGCGa--GCGC----CUGGA---CGC- -5'
9198 3' -62.9 NC_002512.2 + 204743 0.66 0.69794
Target:  5'- --gGAcCCGGGUGCUCaGCGaucccGGCCUGgGg -3'
miRNA:   3'- aagCU-GGCCCGCGAG-CGC-----CUGGACgC- -5'
9198 3' -62.9 NC_002512.2 + 132102 0.66 0.69794
Target:  5'- cUCgGACCGGG-GCUCGaGGGCC-GCc -3'
miRNA:   3'- aAG-CUGGCCCgCGAGCgCCUGGaCGc -5'
9198 3' -62.9 NC_002512.2 + 92125 0.66 0.69794
Target:  5'- --aGACCGcGGacaCGCU-GCGGGCgCUGCGg -3'
miRNA:   3'- aagCUGGC-CC---GCGAgCGCCUG-GACGC- -5'
9198 3' -62.9 NC_002512.2 + 143554 0.66 0.697002
Target:  5'- -gCGGCCGcGCGuCUCcccgcggGCGGGCCgGCGg -3'
miRNA:   3'- aaGCUGGCcCGC-GAG-------CGCCUGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 228034 0.66 0.688547
Target:  5'- -gCGACCGGacggcggcgaGaCGCcCGCGGACggCUGCGg -3'
miRNA:   3'- aaGCUGGCC----------C-GCGaGCGCCUG--GACGC- -5'
9198 3' -62.9 NC_002512.2 + 75343 0.66 0.688547
Target:  5'- -gCGACCGaGGCGgaggCgGCGGACCgguaGCGa -3'
miRNA:   3'- aaGCUGGC-CCGCga--G-CGCCUGGa---CGC- -5'
9198 3' -62.9 NC_002512.2 + 100579 0.66 0.688547
Target:  5'- -gCG-CCGGGCGCUCG-GGuggggaaaccgcGCCcGCGg -3'
miRNA:   3'- aaGCuGGCCCGCGAGCgCC------------UGGaCGC- -5'
9198 3' -62.9 NC_002512.2 + 77529 0.66 0.688547
Target:  5'- gUCGAUCGGGaccggagaCGCcuacgUCGCGGACg-GCGg -3'
miRNA:   3'- aAGCUGGCCC--------GCG-----AGCGCCUGgaCGC- -5'
9198 3' -62.9 NC_002512.2 + 74571 0.66 0.679114
Target:  5'- -gCGACCuGGGCGCUC-UGGugCU-CGa -3'
miRNA:   3'- aaGCUGG-CCCGCGAGcGCCugGAcGC- -5'
9198 3' -62.9 NC_002512.2 + 211335 0.66 0.679114
Target:  5'- -cCGGgcCCGGGCGCUgGgGGACgCgcGCGg -3'
miRNA:   3'- aaGCU--GGCCCGCGAgCgCCUG-Ga-CGC- -5'
9198 3' -62.9 NC_002512.2 + 98549 0.67 0.669647
Target:  5'- cUCG-CCcGGCGUUcCGCGGAUCcgGCGg -3'
miRNA:   3'- aAGCuGGcCCGCGA-GCGCCUGGa-CGC- -5'
9198 3' -62.9 NC_002512.2 + 219849 0.67 0.669647
Target:  5'- -cCGGCCcggGGGCGgaUCGCGGACggGUGa -3'
miRNA:   3'- aaGCUGG---CCCGCg-AGCGCCUGgaCGC- -5'
9198 3' -62.9 NC_002512.2 + 126728 0.67 0.660153
Target:  5'- cUCG-CCGGGCGCggCGCGuGCCUcuugGCc -3'
miRNA:   3'- aAGCuGGCCCGCGa-GCGCcUGGA----CGc -5'
9198 3' -62.9 NC_002512.2 + 222244 0.67 0.660153
Target:  5'- cUUCGucGCCGuGGCGgguCUCGUGauGGCCUGCGc -3'
miRNA:   3'- -AAGC--UGGC-CCGC---GAGCGC--CUGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.