miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9198 5' -57.6 NC_002512.2 + 122261 0.66 0.915914
Target:  5'- uUCC-CCgGCGGCcgCGGGGAcguCCUGgaGCCc -3'
miRNA:   3'- -AGGuGGaCGUCGa-GCUCCU---GGAC--UGG- -5'
9198 5' -57.6 NC_002512.2 + 88014 0.66 0.915914
Target:  5'- aCgGCUcGCGGCguuccaGAGGACCguguUGGCCg -3'
miRNA:   3'- aGgUGGaCGUCGag----CUCCUGG----ACUGG- -5'
9198 5' -57.6 NC_002512.2 + 98750 0.66 0.915914
Target:  5'- gCCGcCCUGCcccGCcaUCG-GGuCCUGGCCg -3'
miRNA:   3'- aGGU-GGACGu--CG--AGCuCCuGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 192062 0.66 0.915914
Target:  5'- gCgACCUGUacGGCUCGGacgcGucCCUGACCc -3'
miRNA:   3'- aGgUGGACG--UCGAGCU----CcuGGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 106047 0.66 0.915914
Target:  5'- cUCCGCCacGCAGaucacggcCGGGGACUUGgucGCCa -3'
miRNA:   3'- -AGGUGGa-CGUCga------GCUCCUGGAC---UGG- -5'
9198 5' -57.6 NC_002512.2 + 102106 0.66 0.915914
Target:  5'- cUCCcUgUGCGGcCUCGgccgucggaggGGGAcCCUGGCCg -3'
miRNA:   3'- -AGGuGgACGUC-GAGC-----------UCCU-GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 97411 0.66 0.915914
Target:  5'- uUCCuCCUGgGGCUggccaCGAuGGugCUGGCg -3'
miRNA:   3'- -AGGuGGACgUCGA-----GCU-CCugGACUGg -5'
9198 5' -57.6 NC_002512.2 + 138583 0.66 0.915356
Target:  5'- aCCACgCUGCggaucgcGGC-CGGGGAgaCgCUGGCCa -3'
miRNA:   3'- aGGUG-GACG-------UCGaGCUCCU--G-GACUGG- -5'
9198 5' -57.6 NC_002512.2 + 118353 0.66 0.915356
Target:  5'- gCC-CCUGCcGCUUccugcagGAGGcCCUGACg -3'
miRNA:   3'- aGGuGGACGuCGAG-------CUCCuGGACUGg -5'
9198 5' -57.6 NC_002512.2 + 62287 0.66 0.914233
Target:  5'- cCCGCCUgGCAGcCUgGAuGGAUCUccgucaccuguaucGACCa -3'
miRNA:   3'- aGGUGGA-CGUC-GAgCU-CCUGGA--------------CUGG- -5'
9198 5' -57.6 NC_002512.2 + 11676 0.66 0.910232
Target:  5'- cCCGCC-GCGGCccgaggCGGGGGCCcgaggGGCg -3'
miRNA:   3'- aGGUGGaCGUCGa-----GCUCCUGGa----CUGg -5'
9198 5' -57.6 NC_002512.2 + 116564 0.66 0.910232
Target:  5'- gCCGCCUGU-GCgaCGAGccccuCCUGGCCu -3'
miRNA:   3'- aGGUGGACGuCGa-GCUCcu---GGACUGG- -5'
9198 5' -57.6 NC_002512.2 + 149117 0.66 0.910232
Target:  5'- cUCCuCCUcgAGCcgCGAGGACCcccggGACCc -3'
miRNA:   3'- -AGGuGGAcgUCGa-GCUCCUGGa----CUGG- -5'
9198 5' -57.6 NC_002512.2 + 211441 0.66 0.910232
Target:  5'- uUCUGCCcGgAGCUCGGGcGCCUGcggcuGCCc -3'
miRNA:   3'- -AGGUGGaCgUCGAGCUCcUGGAC-----UGG- -5'
9198 5' -57.6 NC_002512.2 + 127512 0.66 0.910232
Target:  5'- aUCC-CCUcgucCGGCUCcAGGACCUccggacGACCg -3'
miRNA:   3'- -AGGuGGAc---GUCGAGcUCCUGGA------CUGG- -5'
9198 5' -57.6 NC_002512.2 + 91342 0.66 0.910232
Target:  5'- cUCCGcuCCUGCcagcuGCUCGAcGGGCUgGACg -3'
miRNA:   3'- -AGGU--GGACGu----CGAGCU-CCUGGaCUGg -5'
9198 5' -57.6 NC_002512.2 + 62148 0.66 0.906718
Target:  5'- -aCGCCcgGCAGCUccucgccccgcucgaCGAGaGACCgguaGACCg -3'
miRNA:   3'- agGUGGa-CGUCGA---------------GCUC-CUGGa---CUGG- -5'
9198 5' -57.6 NC_002512.2 + 115023 0.66 0.906718
Target:  5'- cCCugCUGCGGCacgcggcccccugcuUCGugcugcGGACgCUGAUCg -3'
miRNA:   3'- aGGugGACGUCG---------------AGCu-----CCUG-GACUGG- -5'
9198 5' -57.6 NC_002512.2 + 143302 0.66 0.904331
Target:  5'- aCCAUC-GCGGCgagCGaAGGACg-GACCa -3'
miRNA:   3'- aGGUGGaCGUCGa--GC-UCCUGgaCUGG- -5'
9198 5' -57.6 NC_002512.2 + 116308 0.66 0.904331
Target:  5'- uUCUACCUGa---UCGAGuGCCUGAUCc -3'
miRNA:   3'- -AGGUGGACgucgAGCUCcUGGACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.