miRNA display CGI


Results 1 - 20 of 446 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9199 5' -65.9 NC_002512.2 + 99881 0.66 0.662204
Target:  5'- cGGAgCgCGGAcacGGGC-ACgCGGCGCCGc -3'
miRNA:   3'- cCCUgG-GCCU---CCCGcUG-GCCGCGGCc -5'
9199 5' -65.9 NC_002512.2 + 45202 0.66 0.662204
Target:  5'- cGGGA-CCGGcGGcGCGGaCGGCcGCCGa -3'
miRNA:   3'- -CCCUgGGCCuCC-CGCUgGCCG-CGGCc -5'
9199 5' -65.9 NC_002512.2 + 123959 0.66 0.662204
Target:  5'- cGGGACCCucGGGGCu-CUGGCGuuCCGu -3'
miRNA:   3'- -CCCUGGGccUCCCGcuGGCCGC--GGCc -5'
9199 5' -65.9 NC_002512.2 + 131739 0.66 0.662204
Target:  5'- cGGcGACcgCCGGGgcGGGCGGCCGcgacgaccaGCGCCc- -3'
miRNA:   3'- -CC-CUG--GGCCU--CCCGCUGGC---------CGCGGcc -5'
9199 5' -65.9 NC_002512.2 + 127865 0.66 0.662204
Target:  5'- uGGACaggGaGAGGGCGggaaaGCUGGCGCUGa -3'
miRNA:   3'- cCCUGgg-C-CUCCCGC-----UGGCCGCGGCc -5'
9199 5' -65.9 NC_002512.2 + 92586 0.66 0.662204
Target:  5'- -cGGCCgGGAgGGGCGG-CGGUcccgagGCCGGu -3'
miRNA:   3'- ccCUGGgCCU-CCCGCUgGCCG------CGGCC- -5'
9199 5' -65.9 NC_002512.2 + 90561 0.66 0.662204
Target:  5'- aGGACgaGGgcgAGGGCGA-CGGCcCCGGu -3'
miRNA:   3'- cCCUGggCC---UCCCGCUgGCCGcGGCC- -5'
9199 5' -65.9 NC_002512.2 + 87846 0.66 0.662204
Target:  5'- cGGGCCCucgcGGcGGGUcGCCGGCccCCGGc -3'
miRNA:   3'- cCCUGGG----CCuCCCGcUGGCCGc-GGCC- -5'
9199 5' -65.9 NC_002512.2 + 226766 0.66 0.661294
Target:  5'- -cGACgCGGAGGGCGAggacgucUCGGgcgaCGCCGu -3'
miRNA:   3'- ccCUGgGCCUCCCGCU-------GGCC----GCGGCc -5'
9199 5' -65.9 NC_002512.2 + 94070 0.66 0.656738
Target:  5'- cGGGACCCuccuccccccgcgacGGc-GGCGGCCGGU-CCGa -3'
miRNA:   3'- -CCCUGGG---------------CCucCCGCUGGCCGcGGCc -5'
9199 5' -65.9 NC_002512.2 + 20296 0.66 0.653091
Target:  5'- uGGACgUGGc-GGUGACC-GUGCCGGa -3'
miRNA:   3'- cCCUGgGCCucCCGCUGGcCGCGGCC- -5'
9199 5' -65.9 NC_002512.2 + 120611 0.66 0.653091
Target:  5'- cGGGCgCCGGugagagcgGGaGGCGGCgGGacgggaCGCCGGg -3'
miRNA:   3'- cCCUG-GGCC--------UC-CCGCUGgCC------GCGGCC- -5'
9199 5' -65.9 NC_002512.2 + 102662 0.66 0.653091
Target:  5'- -aGACCgGGgagAGGGCGGCCGcccGCuGuCCGGg -3'
miRNA:   3'- ccCUGGgCC---UCCCGCUGGC---CG-C-GGCC- -5'
9199 5' -65.9 NC_002512.2 + 97318 0.66 0.653091
Target:  5'- uGGccgcGCCCGccggggucGAGGGCGGagaggccgaCGGCGCCGc -3'
miRNA:   3'- cCC----UGGGC--------CUCCCGCUg--------GCCGCGGCc -5'
9199 5' -65.9 NC_002512.2 + 124284 0.66 0.653091
Target:  5'- cGGACCC---GGGCGugCGGCucgaccGCgCGGa -3'
miRNA:   3'- cCCUGGGccuCCCGCugGCCG------CG-GCC- -5'
9199 5' -65.9 NC_002512.2 + 185518 0.66 0.653091
Target:  5'- gGGGGCCUGccgcucuucgaGGGGGUGgccuACCGGCcCCGcGg -3'
miRNA:   3'- -CCCUGGGC-----------CUCCCGC----UGGCCGcGGC-C- -5'
9199 5' -65.9 NC_002512.2 + 213670 0.66 0.653091
Target:  5'- cGGAggCGGAGGGgaGcCCGGCGUCGc -3'
miRNA:   3'- cCCUggGCCUCCCg-CuGGCCGCGGCc -5'
9199 5' -65.9 NC_002512.2 + 147925 0.66 0.643964
Target:  5'- --cACCCGcccGGGGCucACCGcGCGCCGGc -3'
miRNA:   3'- cccUGGGCc--UCCCGc-UGGC-CGCGGCC- -5'
9199 5' -65.9 NC_002512.2 + 148819 0.66 0.643964
Target:  5'- cGGAgcucguCCUGG-GGGCGGuCCGGgcgcaccgcUGCCGGa -3'
miRNA:   3'- cCCU------GGGCCuCCCGCU-GGCC---------GCGGCC- -5'
9199 5' -65.9 NC_002512.2 + 22521 0.66 0.643964
Target:  5'- gGGGACgCCGaacgcgucGGuGuCGAUCGGgGCCGGg -3'
miRNA:   3'- -CCCUG-GGCcu------CC-C-GCUGGCCgCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.