miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 202140 0.67 0.946949
Target:  5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3'
miRNA:   3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 138673 0.67 0.958305
Target:  5'- -aCGGUGgACUCGCuGAacgugccccggguGGCGGUCu- -3'
miRNA:   3'- gaGCCGCgUGAGCGuUU-------------UCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 223639 0.67 0.958664
Target:  5'- gCUCGGCGgGCUCGuCAugcucuCGGUCu- -3'
miRNA:   3'- -GAGCCGCgUGAGC-GUuuuc--GCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 106773 0.67 0.954977
Target:  5'- uCUCGGCccgcgGCACUgGUcgGGGUcggGGUCGAc -3'
miRNA:   3'- -GAGCCG-----CGUGAgCGuuUUCG---CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 151576 0.67 0.958664
Target:  5'- -aCGGU-CGCUCGCAGucGCGGaaaCGAg -3'
miRNA:   3'- gaGCCGcGUGAGCGUUuuCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 123827 0.67 0.958664
Target:  5'- --aGGCGCugUCGCAcGAucugcgcccGCGG-CGAc -3'
miRNA:   3'- gagCCGCGugAGCGUuUU---------CGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 104279 0.67 0.954977
Target:  5'- -cCGGCGUcuuuCUCGCGuccGGCGG-CGGg -3'
miRNA:   3'- gaGCCGCGu---GAGCGUuu-UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 101976 0.67 0.958305
Target:  5'- -cCGGCGgGCUCGUGGccgauccGA-CGGUCGAg -3'
miRNA:   3'- gaGCCGCgUGAGCGUU-------UUcGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 225282 0.67 0.954977
Target:  5'- cCUCGGCGUccguCUCGCGGcccGCGG-CGc -3'
miRNA:   3'- -GAGCCGCGu---GAGCGUUuu-CGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 124380 0.67 0.946949
Target:  5'- -aCGGCGUcCUgCGCGAGAGgcUGGUCGu -3'
miRNA:   3'- gaGCCGCGuGA-GCGUUUUC--GCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 84431 0.67 0.951073
Target:  5'- cCUCGGUcUugUCGUuGAGGCGGagGAu -3'
miRNA:   3'- -GAGCCGcGugAGCGuUUUCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 36869 0.67 0.950671
Target:  5'- --aGGCGUACUUGCAggugggcAGGGCGG-CGc -3'
miRNA:   3'- gagCCGCGUGAGCGU-------UUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 203453 0.67 0.958664
Target:  5'- gUCGGCGUcgACaCGCuguacGAGCGGUuCGAc -3'
miRNA:   3'- gAGCCGCG--UGaGCGuu---UUCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 62297 0.67 0.946949
Target:  5'- -cCGG-GCG-UCGCAGAGGCGG-CGGa -3'
miRNA:   3'- gaGCCgCGUgAGCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 221829 0.68 0.933232
Target:  5'- uCUCGGCGUccgACcCGCGGGGGCGccUCGGg -3'
miRNA:   3'- -GAGCCGCG---UGaGCGUUUUCGCc-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 57080 0.68 0.917467
Target:  5'- --aGGCGCAC-CGCAAgcuccgcugaccGAGCGGgaCGAg -3'
miRNA:   3'- gagCCGCGUGaGCGUU------------UUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 6415 0.68 0.917467
Target:  5'- -gCGGCgGCGCUgGgGAAGGCGGcCGu -3'
miRNA:   3'- gaGCCG-CGUGAgCgUUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 45273 0.68 0.917467
Target:  5'- -gCGGgGCGCUCGCGcucgucucGCgGGUCGGa -3'
miRNA:   3'- gaGCCgCGUGAGCGUuuu-----CG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 17795 0.68 0.911757
Target:  5'- aCUCGGCgagcacGCGCUCGuCGuacAGGCGG-CGGa -3'
miRNA:   3'- -GAGCCG------CGUGAGC-GUu--UUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 138308 0.68 0.917467
Target:  5'- -cCGcGCGCGCUCGUagcggauccgcGAGAGCGG-CGu -3'
miRNA:   3'- gaGC-CGCGUGAGCG-----------UUUUCGCCaGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.