miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 85567 0.68 0.933232
Target:  5'- --aGGCGCGggaGCGGGAGCGGcCGGg -3'
miRNA:   3'- gagCCGCGUgagCGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 3601 0.68 0.933232
Target:  5'- uCUCGGgGaCAggCGCAGAGcccGCGGUCGu -3'
miRNA:   3'- -GAGCCgC-GUgaGCGUUUU---CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 57080 0.68 0.917467
Target:  5'- --aGGCGCAC-CGCAAgcuccgcugaccGAGCGGgaCGAg -3'
miRNA:   3'- gagCCGCGUGaGCGUU------------UUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 6415 0.68 0.917467
Target:  5'- -gCGGCgGCGCUgGgGAAGGCGGcCGu -3'
miRNA:   3'- gaGCCG-CGUGAgCgUUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 45273 0.68 0.917467
Target:  5'- -gCGGgGCGCUCGCGcucgucucGCgGGUCGGa -3'
miRNA:   3'- gaGCCgCGUGAGCGUuuu-----CG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 221395 0.68 0.933232
Target:  5'- -gCGGgGCGCgggCGgGGAGGCGG-CGGg -3'
miRNA:   3'- gaGCCgCGUGa--GCgUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 170224 0.68 0.933232
Target:  5'- -gCGGUGCGCgaaGC---AGCGGUUGAu -3'
miRNA:   3'- gaGCCGCGUGag-CGuuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 185166 0.68 0.932739
Target:  5'- -cCGGCGCggcguccaggACUucuucuccgagaaCGCGGcGGCGGUCGAc -3'
miRNA:   3'- gaGCCGCG----------UGA-------------GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 216733 0.68 0.92295
Target:  5'- -aUGGCGCGCaggucCGCGAgcGCccGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGa----GCGUUuuCG--CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 115472 0.68 0.92295
Target:  5'- -cUGGCGCagaGCUCGCAGgccaaccuGGGCGaGUCGc -3'
miRNA:   3'- gaGCCGCG---UGAGCGUU--------UUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 126835 0.68 0.92295
Target:  5'- gUCGuCGCGCUCGUc---GCGGUCGu -3'
miRNA:   3'- gAGCcGCGUGAGCGuuuuCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 221829 0.68 0.933232
Target:  5'- uCUCGGCGUccgACcCGCGGGGGCGccUCGGg -3'
miRNA:   3'- -GAGCCGCG---UGaGCGUUUUCGCc-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 227424 0.68 0.93803
Target:  5'- uCUCGcGCGCGggCGCGGGccGCGGUCa- -3'
miRNA:   3'- -GAGC-CGCGUgaGCGUUUu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 105677 0.68 0.936138
Target:  5'- -aCGGCGCgguACUCGCGGugccucuguccccGGCGGaCGAg -3'
miRNA:   3'- gaGCCGCG---UGAGCGUUu------------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 153048 0.68 0.93803
Target:  5'- gUCGGCGggagcggucccCGgUCGgGucGGCGGUCGAg -3'
miRNA:   3'- gAGCCGC-----------GUgAGCgUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 17795 0.68 0.911757
Target:  5'- aCUCGGCgagcacGCGCUCGuCGuacAGGCGG-CGGa -3'
miRNA:   3'- -GAGCCG------CGUGAGC-GUu--UUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 193524 0.69 0.879863
Target:  5'- -aCGGUGCACUCGUucugacGGAGUccgcggGGUCGGg -3'
miRNA:   3'- gaGCCGCGUGAGCGu-----UUUCG------CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 167152 0.69 0.90582
Target:  5'- gUCGGCGUGCccCGCGA-GGCcGUCGAc -3'
miRNA:   3'- gAGCCGCGUGa-GCGUUuUCGcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 60895 0.69 0.89966
Target:  5'- -cCGGCGCGCgacCGCu----CGGUCGAg -3'
miRNA:   3'- gaGCCGCGUGa--GCGuuuucGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.