miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 153048 0.68 0.93803
Target:  5'- gUCGGCGggagcggucccCGgUCGgGucGGCGGUCGAg -3'
miRNA:   3'- gAGCCGC-----------GUgAGCgUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 170224 0.68 0.933232
Target:  5'- -gCGGUGCGCgaaGC---AGCGGUUGAu -3'
miRNA:   3'- gaGCCGCGUGag-CGuuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 185166 0.68 0.932739
Target:  5'- -cCGGCGCggcguccaggACUucuucuccgagaaCGCGGcGGCGGUCGAc -3'
miRNA:   3'- gaGCCGCG----------UGA-------------GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 216733 0.68 0.92295
Target:  5'- -aUGGCGCGCaggucCGCGAgcGCccGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGa----GCGUUuuCG--CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 115472 0.68 0.92295
Target:  5'- -cUGGCGCagaGCUCGCAGgccaaccuGGGCGaGUCGc -3'
miRNA:   3'- gaGCCGCG---UGAGCGUU--------UUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 126835 0.68 0.92295
Target:  5'- gUCGuCGCGCUCGUc---GCGGUCGu -3'
miRNA:   3'- gAGCcGCGUGAGCGuuuuCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 170468 0.67 0.951073
Target:  5'- -aUGGCGCACaggUUGCAGc-GCGuGUCGAu -3'
miRNA:   3'- gaGCCGCGUG---AGCGUUuuCGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 62710 0.67 0.942603
Target:  5'- uCUUGaCGCGCagCGCGuc-GCGGUCGAc -3'
miRNA:   3'- -GAGCcGCGUGa-GCGUuuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 89767 0.67 0.942156
Target:  5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3'
miRNA:   3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5'
9205 5' -55.1 NC_002512.2 + 57307 0.67 0.942603
Target:  5'- -cCGGUcucGUACUCGCGGgcGCGGagGAa -3'
miRNA:   3'- gaGCCG---CGUGAGCGUUuuCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 170649 0.67 0.951073
Target:  5'- -cCGGCGC-CUCGCcu--GCGGUUu- -3'
miRNA:   3'- gaGCCGCGuGAGCGuuuuCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 103660 0.67 0.954597
Target:  5'- cCUCGGCGgcCACgagcgccucgacgUCGCAGAgGGCGG-CGGa -3'
miRNA:   3'- -GAGCCGC--GUG-------------AGCGUUU-UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 225282 0.67 0.954977
Target:  5'- cCUCGGCGUccguCUCGCGGcccGCGG-CGc -3'
miRNA:   3'- -GAGCCGCGu---GAGCGUUuu-CGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 150287 0.67 0.954977
Target:  5'- -cCGGCGCugccGCcCGCGAAgaGGCGGagGAg -3'
miRNA:   3'- gaGCCGCG----UGaGCGUUU--UCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 130249 0.67 0.950671
Target:  5'- -cCGGCGUGCUUGguGAggaucagGGCGGcCGGc -3'
miRNA:   3'- gaGCCGCGUGAGCguUU-------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 223639 0.67 0.958664
Target:  5'- gCUCGGCGgGCUCGuCAugcucuCGGUCu- -3'
miRNA:   3'- -GAGCCGCgUGAGC-GUuuuc--GCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 203453 0.67 0.958664
Target:  5'- gUCGGCGUcgACaCGCuguacGAGCGGUuCGAc -3'
miRNA:   3'- gAGCCGCG--UGaGCGuu---UUCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 202140 0.67 0.946949
Target:  5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3'
miRNA:   3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 138673 0.67 0.958305
Target:  5'- -aCGGUGgACUCGCuGAacgugccccggguGGCGGUCu- -3'
miRNA:   3'- gaGCCGCgUGAGCGuUU-------------UCGCCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.