miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 148816 0.66 0.971333
Target:  5'- uCUCGGa--GCUCGUccuGGGGGCGGUCc- -3'
miRNA:   3'- -GAGCCgcgUGAGCG---UUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 150287 0.67 0.954977
Target:  5'- -cCGGCGCugccGCcCGCGAAgaGGCGGagGAg -3'
miRNA:   3'- gaGCCGCG----UGaGCGUUU--UCGCCagCU- -5'
9205 5' -55.1 NC_002512.2 + 151576 0.67 0.958664
Target:  5'- -aCGGU-CGCUCGCAGucGCGGaaaCGAg -3'
miRNA:   3'- gaGCCGcGUGAGCGUUuuCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 153048 0.68 0.93803
Target:  5'- gUCGGCGggagcggucccCGgUCGgGucGGCGGUCGAg -3'
miRNA:   3'- gAGCCGC-----------GUgAGCgUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 153391 0.66 0.974006
Target:  5'- -cCGGaGCgACguggagCGCGGcGGCGGUCGAg -3'
miRNA:   3'- gaGCCgCG-UGa-----GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 153732 0.75 0.588473
Target:  5'- -aCGGCGCugUcCGUggGGGGGUGGUCGAa -3'
miRNA:   3'- gaGCCGCGugA-GCG--UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 155258 0.73 0.698008
Target:  5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3'
miRNA:   3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 156579 0.66 0.971333
Target:  5'- gCUCGGUGCGCuUCGUc--AGCGGcCu- -3'
miRNA:   3'- -GAGCCGCGUG-AGCGuuuUCGCCaGcu -5'
9205 5' -55.1 NC_002512.2 + 158979 0.66 0.976494
Target:  5'- uUCGGCGgcCACggcgggGCGGAGGCGG-CGGc -3'
miRNA:   3'- gAGCCGC--GUGag----CGUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 160854 0.75 0.588473
Target:  5'- gCUgGGCGCAgUCGCAGAggGGCGGacacgUCGGc -3'
miRNA:   3'- -GAgCCGCGUgAGCGUUU--UCGCC-----AGCU- -5'
9205 5' -55.1 NC_002512.2 + 164248 0.69 0.886678
Target:  5'- uUCGGCGCcgUgGCGGGGGCcgucgGGUCGAu -3'
miRNA:   3'- gAGCCGCGugAgCGUUUUCG-----CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 164451 0.72 0.783303
Target:  5'- gCUCGGCGCcCUCGgCGGGGGCGa-CGAc -3'
miRNA:   3'- -GAGCCGCGuGAGC-GUUUUCGCcaGCU- -5'
9205 5' -55.1 NC_002512.2 + 167152 0.69 0.90582
Target:  5'- gUCGGCGUGCccCGCGA-GGCcGUCGAc -3'
miRNA:   3'- gAGCCGCGUGa-GCGUUuUCGcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 168980 0.73 0.707811
Target:  5'- gUCGGUGUccGCUCGaccGAGCGGUCGc -3'
miRNA:   3'- gAGCCGCG--UGAGCguuUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 170224 0.68 0.933232
Target:  5'- -gCGGUGCGCgaaGC---AGCGGUUGAu -3'
miRNA:   3'- gaGCCGCGUGag-CGuuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 170468 0.67 0.951073
Target:  5'- -aUGGCGCACaggUUGCAGc-GCGuGUCGAu -3'
miRNA:   3'- gaGCCGCGUG---AGCGUUuuCGC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 170649 0.67 0.951073
Target:  5'- -cCGGCGC-CUCGCcu--GCGGUUu- -3'
miRNA:   3'- gaGCCGCGuGAGCGuuuuCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 185166 0.68 0.932739
Target:  5'- -cCGGCGCggcguccaggACUucuucuccgagaaCGCGGcGGCGGUCGAc -3'
miRNA:   3'- gaGCCGCG----------UGA-------------GCGUUuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 192643 0.66 0.971333
Target:  5'- -aCGGCaacgGCUCGCGGGGGCGGcugccccacUCGGa -3'
miRNA:   3'- gaGCCGcg--UGAGCGUUUUCGCC---------AGCU- -5'
9205 5' -55.1 NC_002512.2 + 193524 0.69 0.879863
Target:  5'- -aCGGUGCACUCGUucugacGGAGUccgcggGGUCGGg -3'
miRNA:   3'- gaGCCGCGUGAGCGu-----UUUCG------CCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.