miRNA display CGI


Results 121 - 140 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 193558 0.66 0.968468
Target:  5'- --nGGCGCugUgGUggGAGgGGUgGGg -3'
miRNA:   3'- gagCCGCGugAgCGuuUUCgCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 193881 0.66 0.962139
Target:  5'- -gCGGUGgACgaCGCGGGAGCgGGUCGc -3'
miRNA:   3'- gaGCCGCgUGa-GCGUUUUCG-CCAGCu -5'
9205 5' -55.1 NC_002512.2 + 194991 0.73 0.717551
Target:  5'- uCUCGGCGCAagaggGCGAcGGCGGUCc- -3'
miRNA:   3'- -GAGCCGCGUgag--CGUUuUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 196099 0.72 0.783303
Target:  5'- cCUCuGCuGCAUgucgaugaaGCAGAGGCGGUCGAu -3'
miRNA:   3'- -GAGcCG-CGUGag-------CGUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 198029 0.66 0.968468
Target:  5'- --gGGaCGCGCgCGCGAGGggacGCGGUCGu -3'
miRNA:   3'- gagCC-GCGUGaGCGUUUU----CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 202140 0.67 0.946949
Target:  5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3'
miRNA:   3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 203453 0.67 0.958664
Target:  5'- gUCGGCGUcgACaCGCuguacGAGCGGUuCGAc -3'
miRNA:   3'- gAGCCGCG--UGaGCGuu---UUCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 214312 0.72 0.783303
Target:  5'- uUCGGCGUGC-CGCAcGAGCaGGcCGAc -3'
miRNA:   3'- gAGCCGCGUGaGCGUuUUCG-CCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 216553 0.7 0.865606
Target:  5'- -gCGGCGCGCgaaCGCAGcauGCGG-CGGg -3'
miRNA:   3'- gaGCCGCGUGa--GCGUUuu-CGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 216733 0.68 0.92295
Target:  5'- -aUGGCGCGCaggucCGCGAgcGCccGGUCGAa -3'
miRNA:   3'- gaGCCGCGUGa----GCGUUuuCG--CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 217831 0.66 0.962139
Target:  5'- -aCGGCGgGCgguUCgGCAGAGGCGGcagCGGu -3'
miRNA:   3'- gaGCCGCgUG---AG-CGUUUUCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 217890 0.66 0.976494
Target:  5'- aUCGGCGgcCGCgUCGuCGAGcGGCGGUaCGAg -3'
miRNA:   3'- gAGCCGC--GUG-AGC-GUUU-UCGCCA-GCU- -5'
9205 5' -55.1 NC_002512.2 + 219708 0.66 0.968468
Target:  5'- gUCGGCGCuCggggCGCGAGAGgCGGcCc- -3'
miRNA:   3'- gAGCCGCGuGa---GCGUUUUC-GCCaGcu -5'
9205 5' -55.1 NC_002512.2 + 219811 0.66 0.971333
Target:  5'- --gGGaCGCGCggggCGCGAcAGGgGGUCGGu -3'
miRNA:   3'- gagCC-GCGUGa---GCGUU-UUCgCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 221395 0.68 0.933232
Target:  5'- -gCGGgGCGCgggCGgGGAGGCGG-CGGg -3'
miRNA:   3'- gaGCCgCGUGa--GCgUUUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 221531 0.7 0.834732
Target:  5'- cCUCGGCGCucccgccuaccGCUaCGCGGAcccGCGGUCu- -3'
miRNA:   3'- -GAGCCGCG-----------UGA-GCGUUUu--CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 221829 0.68 0.933232
Target:  5'- uCUCGGCGUccgACcCGCGGGGGCGccUCGGg -3'
miRNA:   3'- -GAGCCGCG---UGaGCGUUUUCGCc-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 223639 0.67 0.958664
Target:  5'- gCUCGGCGgGCUCGuCAugcucuCGGUCu- -3'
miRNA:   3'- -GAGCCGCgUGAGC-GUuuuc--GCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 225282 0.67 0.954977
Target:  5'- cCUCGGCGUccguCUCGCGGcccGCGG-CGc -3'
miRNA:   3'- -GAGCCGCGu---GAGCGUUuu-CGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 227424 0.68 0.93803
Target:  5'- uCUCGcGCGCGggCGCGGGccGCGGUCa- -3'
miRNA:   3'- -GAGC-CGCGUgaGCGUUUu-CGCCAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.