Results 81 - 100 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9205 | 5' | -55.1 | NC_002512.2 | + | 101122 | 0.69 | 0.90582 |
Target: 5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3' miRNA: 3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 99932 | 0.7 | 0.842731 |
Target: 5'- aUCGcGuCGCAgaCGCAGAAGaGGUCGAa -3' miRNA: 3'- gAGC-C-GCGUgaGCGUUUUCgCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 99085 | 0.66 | 0.962139 |
Target: 5'- cCUCGGC-CAC-CGCGugcuGCGcGUCGGc -3' miRNA: 3'- -GAGCCGcGUGaGCGUuuu-CGC-CAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 97354 | 0.66 | 0.974006 |
Target: 5'- -aCGGCGcCGCcCGCGGAgcggggaccgcGGCGGcCGGa -3' miRNA: 3'- gaGCCGC-GUGaGCGUUU-----------UCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 96303 | 0.71 | 0.818214 |
Target: 5'- -cCGGCcCGCUCGgGuccccGGCGGUCGAu -3' miRNA: 3'- gaGCCGcGUGAGCgUuu---UCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 95957 | 0.66 | 0.975767 |
Target: 5'- -gCGGgGgGCUgaggcccggguuggCGCAGcGGCGGUCGGc -3' miRNA: 3'- gaGCCgCgUGA--------------GCGUUuUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 94506 | 0.66 | 0.976253 |
Target: 5'- gUCgGGCGCGuCUucgaaccCGCccaggacGAAGCGGUCGAc -3' miRNA: 3'- gAG-CCGCGU-GA-------GCGu------UUUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 92015 | 0.69 | 0.893278 |
Target: 5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3' miRNA: 3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 91949 | 0.66 | 0.965405 |
Target: 5'- uUgGGCGCGaUCGCcAGGGCGGagCGGc -3' miRNA: 3'- gAgCCGCGUgAGCGuUUUCGCCa-GCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 91920 | 0.68 | 0.928205 |
Target: 5'- -gCGGCGCGC-CGUc--GGCGGcCGAc -3' miRNA: 3'- gaGCCGCGUGaGCGuuuUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 89767 | 0.67 | 0.942156 |
Target: 5'- gUCGGCGCGCggGCAucugacaucggggAGAGCGucGUCGu -3' miRNA: 3'- gAGCCGCGUGagCGU-------------UUUCGC--CAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 88883 | 0.67 | 0.954977 |
Target: 5'- gUCGGuCGCcguccUUCGCGAucGCGGUCc- -3' miRNA: 3'- gAGCC-GCGu----GAGCGUUuuCGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 87134 | 0.66 | 0.976494 |
Target: 5'- -gCGGCGCACgaGCuggacAAGGCGGgcaacgCGAa -3' miRNA: 3'- gaGCCGCGUGagCGu----UUUCGCCa-----GCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 86578 | 0.67 | 0.946525 |
Target: 5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3' miRNA: 3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 85567 | 0.68 | 0.933232 |
Target: 5'- --aGGCGCGggaGCGGGAGCGGcCGGg -3' miRNA: 3'- gagCCGCGUgagCGUUUUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 85284 | 0.66 | 0.965405 |
Target: 5'- -gCGGCGCGgacCUCGUgcGAGgGGaUCGAc -3' miRNA: 3'- gaGCCGCGU---GAGCGuuUUCgCC-AGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 84431 | 0.67 | 0.951073 |
Target: 5'- cCUCGGUcUugUCGUuGAGGCGGagGAu -3' miRNA: 3'- -GAGCCGcGugAGCGuUUUCGCCagCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 83937 | 0.72 | 0.746321 |
Target: 5'- -cCGGCGCAUgUCGCGc-AGCaGGUCGAa -3' miRNA: 3'- gaGCCGCGUG-AGCGUuuUCG-CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 82969 | 0.71 | 0.818214 |
Target: 5'- -gCGGCGCACggCGCGGAAGaC-GUCGGc -3' miRNA: 3'- gaGCCGCGUGa-GCGUUUUC-GcCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 82351 | 0.66 | 0.974006 |
Target: 5'- -gCGGUGgGCgUGCGGGGGCGG-CGGa -3' miRNA: 3'- gaGCCGCgUGaGCGUUUUCGCCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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