miRNA display CGI


Results 81 - 100 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 62578 0.66 0.974006
Target:  5'- aCUCgaGGCGCACggggUCGCGGAAcaGGUCGc -3'
miRNA:   3'- -GAG--CCGCGUG----AGCGUUUUcgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 4004 0.66 0.974006
Target:  5'- -gCGGgGgGCgUCGCAGGAGuCGcGUCGGa -3'
miRNA:   3'- gaGCCgCgUG-AGCGUUUUC-GC-CAGCU- -5'
9205 5' -55.1 NC_002512.2 + 160854 0.75 0.588473
Target:  5'- gCUgGGCGCAgUCGCAGAggGGCGGacacgUCGGc -3'
miRNA:   3'- -GAgCCGCGUgAGCGUUU--UCGCC-----AGCU- -5'
9205 5' -55.1 NC_002512.2 + 168980 0.73 0.707811
Target:  5'- gUCGGUGUccGCUCGaccGAGCGGUCGc -3'
miRNA:   3'- gAGCCGCG--UGAGCguuUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 107719 0.72 0.774231
Target:  5'- -gUGGCGCAggUCGCAGAGGUGGgugCGGu -3'
miRNA:   3'- gaGCCGCGUg-AGCGUUUUCGCCa--GCU- -5'
9205 5' -55.1 NC_002512.2 + 194991 0.73 0.717551
Target:  5'- uCUCGGCGCAagaggGCGAcGGCGGUCc- -3'
miRNA:   3'- -GAGCCGCGUgag--CGUUuUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 164451 0.72 0.783303
Target:  5'- gCUCGGCGCcCUCGgCGGGGGCGa-CGAc -3'
miRNA:   3'- -GAGCCGCGuGAGC-GUUUUCGCcaGCU- -5'
9205 5' -55.1 NC_002512.2 + 145155 0.76 0.529638
Target:  5'- -aCGGCGCugUCGCGcGAGCGGaUCc- -3'
miRNA:   3'- gaGCCGCGugAGCGUuUUCGCC-AGcu -5'
9205 5' -55.1 NC_002512.2 + 108573 0.77 0.488824
Target:  5'- -cCGGUGCugUCGCugugguuccgggcgGAGAGCGGUCGc -3'
miRNA:   3'- gaGCCGCGugAGCG--------------UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 193558 0.66 0.968468
Target:  5'- --nGGCGCugUgGUggGAGgGGUgGGg -3'
miRNA:   3'- gagCCGCGugAgCGuuUUCgCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 221829 0.68 0.933232
Target:  5'- uCUCGGCGUccgACcCGCGGGGGCGccUCGGg -3'
miRNA:   3'- -GAGCCGCG---UGaGCGUUUUCGCc-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 105677 0.68 0.936138
Target:  5'- -aCGGCGCgguACUCGCGGugccucuguccccGGCGGaCGAg -3'
miRNA:   3'- gaGCCGCG---UGAGCGUUu------------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 153048 0.68 0.93803
Target:  5'- gUCGGCGggagcggucccCGgUCGgGucGGCGGUCGAg -3'
miRNA:   3'- gAGCCGC-----------GUgAGCgUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 202140 0.67 0.946949
Target:  5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3'
miRNA:   3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 130249 0.67 0.950671
Target:  5'- -cCGGCGUGCUUGguGAggaucagGGCGGcCGGc -3'
miRNA:   3'- gaGCCGCGUGAGCguUU-------UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 198029 0.66 0.968468
Target:  5'- --gGGaCGCGCgCGCGAGGggacGCGGUCGu -3'
miRNA:   3'- gagCC-GCGUGaGCGUUUU----CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 227424 0.68 0.93803
Target:  5'- uCUCGcGCGCGggCGCGGGccGCGGUCa- -3'
miRNA:   3'- -GAGC-CGCGUgaGCGUUUu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 196099 0.72 0.783303
Target:  5'- cCUCuGCuGCAUgucgaugaaGCAGAGGCGGUCGAu -3'
miRNA:   3'- -GAGcCG-CGUGag-------CGUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 102474 0.72 0.736815
Target:  5'- --gGGCGCGCccgUCGCGGuGGCGGUCc- -3'
miRNA:   3'- gagCCGCGUG---AGCGUUuUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 219708 0.66 0.968468
Target:  5'- gUCGGCGCuCggggCGCGAGAGgCGGcCc- -3'
miRNA:   3'- gAGCCGCGuGa---GCGUUUUC-GCCaGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.