Results 101 - 120 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9205 | 5' | -55.1 | NC_002512.2 | + | 225282 | 0.67 | 0.954977 |
Target: 5'- cCUCGGCGUccguCUCGCGGcccGCGG-CGc -3' miRNA: 3'- -GAGCCGCGu---GAGCGUUuu-CGCCaGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 102284 | 0.71 | 0.818214 |
Target: 5'- gCUCGGCGCGCgucgacCGCcAGGGCGacGUCGc -3' miRNA: 3'- -GAGCCGCGUGa-----GCGuUUUCGC--CAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 102474 | 0.72 | 0.736815 |
Target: 5'- --gGGCGCGCccgUCGCGGuGGCGGUCc- -3' miRNA: 3'- gagCCGCGUG---AGCGUUuUCGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 221531 | 0.7 | 0.834732 |
Target: 5'- cCUCGGCGCucccgccuaccGCUaCGCGGAcccGCGGUCu- -3' miRNA: 3'- -GAGCCGCG-----------UGA-GCGUUUu--CGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 99932 | 0.7 | 0.842731 |
Target: 5'- aUCGcGuCGCAgaCGCAGAAGaGGUCGAa -3' miRNA: 3'- gAGC-C-GCGUgaGCGUUUUCgCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 126765 | 0.7 | 0.858174 |
Target: 5'- cCUCGGgGCGCg-GCGGcGGCGG-CGAc -3' miRNA: 3'- -GAGCCgCGUGagCGUUuUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 131213 | 0.7 | 0.865606 |
Target: 5'- -gCGGCcagGCGCUCGaCGuc-GCGGUCGGa -3' miRNA: 3'- gaGCCG---CGUGAGC-GUuuuCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 136082 | 0.69 | 0.886678 |
Target: 5'- -gCGGCGUuccugcugcuGCUCGCGcuGGCGG-CGGc -3' miRNA: 3'- gaGCCGCG----------UGAGCGUuuUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 193524 | 0.69 | 0.879863 |
Target: 5'- -aCGGUGCACUCGUucugacGGAGUccgcggGGUCGGg -3' miRNA: 3'- gaGCCGCGUGAGCGu-----UUUCG------CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 96303 | 0.71 | 0.818214 |
Target: 5'- -cCGGCcCGCUCGgGuccccGGCGGUCGAu -3' miRNA: 3'- gaGCCGcGUGAGCgUuu---UCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 214312 | 0.72 | 0.783303 |
Target: 5'- uUCGGCGUGC-CGCAcGAGCaGGcCGAc -3' miRNA: 3'- gAGCCGCGUGaGCGUuUUCG-CCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 164451 | 0.72 | 0.783303 |
Target: 5'- gCUCGGCGCcCUCGgCGGGGGCGa-CGAc -3' miRNA: 3'- -GAGCCGCGuGAGC-GUUUUCGCcaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 103660 | 0.67 | 0.954597 |
Target: 5'- cCUCGGCGgcCACgagcgccucgacgUCGCAGAgGGCGG-CGGa -3' miRNA: 3'- -GAGCCGC--GUG-------------AGCGUUU-UCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 170649 | 0.67 | 0.951073 |
Target: 5'- -cCGGCGC-CUCGCcu--GCGGUUu- -3' miRNA: 3'- gaGCCGCGuGAGCGuuuuCGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 170468 | 0.67 | 0.951073 |
Target: 5'- -aUGGCGCACaggUUGCAGc-GCGuGUCGAu -3' miRNA: 3'- gaGCCGCGUG---AGCGUUuuCGC-CAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 130249 | 0.67 | 0.950671 |
Target: 5'- -cCGGCGUGCUUGguGAggaucagGGCGGcCGGc -3' miRNA: 3'- gaGCCGCGUGAGCguUU-------UCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 202140 | 0.67 | 0.946949 |
Target: 5'- uCUCGGcCGcCGC-CGCGGggcGGGUGGUCGu -3' miRNA: 3'- -GAGCC-GC-GUGaGCGUU---UUCGCCAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 227424 | 0.68 | 0.93803 |
Target: 5'- uCUCGcGCGCGggCGCGGGccGCGGUCa- -3' miRNA: 3'- -GAGC-CGCGUgaGCGUUUu-CGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 153048 | 0.68 | 0.93803 |
Target: 5'- gUCGGCGggagcggucccCGgUCGgGucGGCGGUCGAg -3' miRNA: 3'- gAGCCGC-----------GUgAGCgUuuUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 105677 | 0.68 | 0.936138 |
Target: 5'- -aCGGCGCgguACUCGCGGugccucuguccccGGCGGaCGAg -3' miRNA: 3'- gaGCCGCG---UGAGCGUUu------------UCGCCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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