Results 121 - 140 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9205 | 5' | -55.1 | NC_002512.2 | + | 102474 | 0.72 | 0.736815 |
Target: 5'- --gGGCGCGCccgUCGCGGuGGCGGUCc- -3' miRNA: 3'- gagCCGCGUG---AGCGUUuUCGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 168980 | 0.73 | 0.707811 |
Target: 5'- gUCGGUGUccGCUCGaccGAGCGGUCGc -3' miRNA: 3'- gAGCCGCG--UGAGCguuUUCGCCAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 160854 | 0.75 | 0.588473 |
Target: 5'- gCUgGGCGCAgUCGCAGAggGGCGGacacgUCGGc -3' miRNA: 3'- -GAgCCGCGUgAGCGUUU--UCGCC-----AGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 145155 | 0.76 | 0.529638 |
Target: 5'- -aCGGCGCugUCGCGcGAGCGGaUCc- -3' miRNA: 3'- gaGCCGCGugAGCGUuUUCGCC-AGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 99932 | 0.7 | 0.842731 |
Target: 5'- aUCGcGuCGCAgaCGCAGAAGaGGUCGAa -3' miRNA: 3'- gAGC-C-GCGUgaGCGUUUUCgCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 126765 | 0.7 | 0.858174 |
Target: 5'- cCUCGGgGCGCg-GCGGcGGCGG-CGAc -3' miRNA: 3'- -GAGCCgCGUGagCGUUuUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 131213 | 0.7 | 0.865606 |
Target: 5'- -gCGGCcagGCGCUCGaCGuc-GCGGUCGGa -3' miRNA: 3'- gaGCCG---CGUGAGC-GUuuuCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 221829 | 0.68 | 0.933232 |
Target: 5'- uCUCGGCGUccgACcCGCGGGGGCGccUCGGg -3' miRNA: 3'- -GAGCCGCG---UGaGCGUUUUCGCc-AGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 221395 | 0.68 | 0.933232 |
Target: 5'- -gCGGgGCGCgggCGgGGAGGCGG-CGGg -3' miRNA: 3'- gaGCCgCGUGa--GCgUUUUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 170224 | 0.68 | 0.933232 |
Target: 5'- -gCGGUGCGCgaaGC---AGCGGUUGAu -3' miRNA: 3'- gaGCCGCGUGag-CGuuuUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 185166 | 0.68 | 0.932739 |
Target: 5'- -cCGGCGCggcguccaggACUucuucuccgagaaCGCGGcGGCGGUCGAc -3' miRNA: 3'- gaGCCGCG----------UGA-------------GCGUUuUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 216733 | 0.68 | 0.92295 |
Target: 5'- -aUGGCGCGCaggucCGCGAgcGCccGGUCGAa -3' miRNA: 3'- gaGCCGCGUGa----GCGUUuuCG--CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 115472 | 0.68 | 0.92295 |
Target: 5'- -cUGGCGCagaGCUCGCAGgccaaccuGGGCGaGUCGc -3' miRNA: 3'- gaGCCGCG---UGAGCGUU--------UUCGC-CAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 126835 | 0.68 | 0.92295 |
Target: 5'- gUCGuCGCGCUCGUc---GCGGUCGu -3' miRNA: 3'- gAGCcGCGUGAGCGuuuuCGCCAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 167152 | 0.69 | 0.90582 |
Target: 5'- gUCGGCGUGCccCGCGA-GGCcGUCGAc -3' miRNA: 3'- gAGCCGCGUGa-GCGUUuUCGcCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 164248 | 0.69 | 0.886678 |
Target: 5'- uUCGGCGCcgUgGCGGGGGCcgucgGGUCGAu -3' miRNA: 3'- gAGCCGCGugAgCGUUUUCG-----CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 136082 | 0.69 | 0.886678 |
Target: 5'- -gCGGCGUuccugcugcuGCUCGCGcuGGCGG-CGGc -3' miRNA: 3'- gaGCCGCG----------UGAGCGUuuUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 193524 | 0.69 | 0.879863 |
Target: 5'- -aCGGUGCACUCGUucugacGGAGUccgcggGGUCGGg -3' miRNA: 3'- gaGCCGCGUGAGCGu-----UUUCG------CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 216553 | 0.7 | 0.865606 |
Target: 5'- -gCGGCGCGCgaaCGCAGcauGCGG-CGGg -3' miRNA: 3'- gaGCCGCGUGa--GCGUUuu-CGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 108573 | 0.77 | 0.488824 |
Target: 5'- -cCGGUGCugUCGCugugguuccgggcgGAGAGCGGUCGc -3' miRNA: 3'- gaGCCGCGugAGCG--------------UUUUCGCCAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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