Results 61 - 80 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9205 | 5' | -55.1 | NC_002512.2 | + | 25873 | 0.7 | 0.834732 |
Target: 5'- gUCGGCccGCACgaaGCcgaAGAGGCGGUCGu -3' miRNA: 3'- gAGCCG--CGUGag-CG---UUUUCGCCAGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 54233 | 0.69 | 0.87917 |
Target: 5'- uUCGaGaCGCACUCGCAcguccgcagcggcAGGGCGG-CGGc -3' miRNA: 3'- gAGC-C-GCGUGAGCGU-------------UUUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 147533 | 0.69 | 0.886006 |
Target: 5'- -cCGGCGCGaggCGCGAAacgcuuaAGCGGUgGGu -3' miRNA: 3'- gaGCCGCGUga-GCGUUU-------UCGCCAgCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 80579 | 0.69 | 0.886678 |
Target: 5'- -gCGGCGaGCcCGCGc-GGCGGUCGAc -3' miRNA: 3'- gaGCCGCgUGaGCGUuuUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 92015 | 0.69 | 0.893278 |
Target: 5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3' miRNA: 3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 122032 | 0.69 | 0.893278 |
Target: 5'- aUCGGCGCucgCGCAcgcccGGGGCGGcgUCGGc -3' miRNA: 3'- gAGCCGCGugaGCGU-----UUUCGCC--AGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 137795 | 0.69 | 0.89966 |
Target: 5'- gCUCGGCGgGCcgCGCGuccGGCGGcCGu -3' miRNA: 3'- -GAGCCGCgUGa-GCGUuu-UCGCCaGCu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 60895 | 0.69 | 0.89966 |
Target: 5'- -cCGGCGCGCgacCGCu----CGGUCGAg -3' miRNA: 3'- gaGCCGCGUGa--GCGuuuucGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 53230 | 0.71 | 0.809709 |
Target: 5'- --aGGCGCGCUgGCGGGAGCuGGU-GAu -3' miRNA: 3'- gagCCGCGUGAgCGUUUUCG-CCAgCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 15483 | 0.72 | 0.783303 |
Target: 5'- -gCGGCGCGCUCcgGCccGAAGUGGcCGAa -3' miRNA: 3'- gaGCCGCGUGAG--CGu-UUUCGCCaGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 107065 | 0.66 | 0.976494 |
Target: 5'- -gCGGCcucCAuCUCGUucucGGGGGCGGUCGGg -3' miRNA: 3'- gaGCCGc--GU-GAGCG----UUUUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 153732 | 0.75 | 0.588473 |
Target: 5'- -aCGGCGCugUcCGUggGGGGGUGGUCGAa -3' miRNA: 3'- gaGCCGCGugA-GCG--UUUUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 108324 | 0.75 | 0.608391 |
Target: 5'- -gCGGCGCGCg-GCG--GGCGGUCGGc -3' miRNA: 3'- gaGCCGCGUGagCGUuuUCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 15961 | 0.74 | 0.628376 |
Target: 5'- -gCGGCG-ACUCGCAcucGccGCGGUCGAu -3' miRNA: 3'- gaGCCGCgUGAGCGU---UuuCGCCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 155258 | 0.73 | 0.698008 |
Target: 5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3' miRNA: 3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 20482 | 0.72 | 0.73586 |
Target: 5'- -aUGGUGCACUgguagCGCAGGAGCuggccgaGGUCGAa -3' miRNA: 3'- gaGCCGCGUGA-----GCGUUUUCG-------CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 83937 | 0.72 | 0.746321 |
Target: 5'- -cCGGCGCAUgUCGCGc-AGCaGGUCGAa -3' miRNA: 3'- gaGCCGCGUG-AGCGUuuUCG-CCAGCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 123668 | 0.72 | 0.755731 |
Target: 5'- -gCGGcCGgGCUCGgGGAAGCGGUCc- -3' miRNA: 3'- gaGCC-GCgUGAGCgUUUUCGCCAGcu -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 37293 | 0.72 | 0.755731 |
Target: 5'- -gCGGCGCGC-CGCAGcAGCGGgaCGGu -3' miRNA: 3'- gaGCCGCGUGaGCGUUuUCGCCa-GCU- -5' |
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9205 | 5' | -55.1 | NC_002512.2 | + | 71968 | 0.72 | 0.772402 |
Target: 5'- --aGGUGUACUCGCAGuuggggaacauGCGGUCGu -3' miRNA: 3'- gagCCGCGUGAGCGUUuu---------CGCCAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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