miRNA display CGI


Results 101 - 120 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 155258 0.73 0.698008
Target:  5'- -gCGGCGUcgacgGCUCGCGggagccGAGGCGGcUCGAg -3'
miRNA:   3'- gaGCCGCG-----UGAGCGU------UUUCGCC-AGCU- -5'
9205 5' -55.1 NC_002512.2 + 15961 0.74 0.628376
Target:  5'- -gCGGCG-ACUCGCAcucGccGCGGUCGAu -3'
miRNA:   3'- gaGCCGCgUGAGCGU---UuuCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 108324 0.75 0.608391
Target:  5'- -gCGGCGCGCg-GCG--GGCGGUCGGc -3'
miRNA:   3'- gaGCCGCGUGagCGUuuUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 153732 0.75 0.588473
Target:  5'- -aCGGCGCugUcCGUggGGGGGUGGUCGAa -3'
miRNA:   3'- gaGCCGCGugA-GCG--UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 25873 0.7 0.834732
Target:  5'- gUCGGCccGCACgaaGCcgaAGAGGCGGUCGu -3'
miRNA:   3'- gAGCCG--CGUGag-CG---UUUUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 54233 0.69 0.87917
Target:  5'- uUCGaGaCGCACUCGCAcguccgcagcggcAGGGCGG-CGGc -3'
miRNA:   3'- gAGC-C-GCGUGAGCGU-------------UUUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 147533 0.69 0.886006
Target:  5'- -cCGGCGCGaggCGCGAAacgcuuaAGCGGUgGGu -3'
miRNA:   3'- gaGCCGCGUga-GCGUUU-------UCGCCAgCU- -5'
9205 5' -55.1 NC_002512.2 + 7319 0.68 0.928205
Target:  5'- -aCGGCGgGC-CGCGGcGGGaCGGUCGGg -3'
miRNA:   3'- gaGCCGCgUGaGCGUU-UUC-GCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 57185 0.68 0.92295
Target:  5'- --aGG-GCAcCUCGCGGcAGCGGUCGc -3'
miRNA:   3'- gagCCgCGU-GAGCGUUuUCGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 138308 0.68 0.917467
Target:  5'- -cCGcGCGCGCUCGUagcggauccgcGAGAGCGG-CGu -3'
miRNA:   3'- gaGC-CGCGUGAGCG-----------UUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 57080 0.68 0.917467
Target:  5'- --aGGCGCAC-CGCAAgcuccgcugaccGAGCGGgaCGAg -3'
miRNA:   3'- gagCCGCGUGaGCGUU------------UUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 6415 0.68 0.917467
Target:  5'- -gCGGCgGCGCUgGgGAAGGCGGcCGu -3'
miRNA:   3'- gaGCCG-CGUGAgCgUUUUCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 45273 0.68 0.917467
Target:  5'- -gCGGgGCGCUCGCGcucgucucGCgGGUCGGa -3'
miRNA:   3'- gaGCCgCGUGAGCGUuuu-----CG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 17795 0.68 0.911757
Target:  5'- aCUCGGCgagcacGCGCUCGuCGuacAGGCGG-CGGa -3'
miRNA:   3'- -GAGCCG------CGUGAGC-GUu--UUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 60895 0.69 0.89966
Target:  5'- -cCGGCGCGCgacCGCu----CGGUCGAg -3'
miRNA:   3'- gaGCCGCGUGa--GCGuuuucGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 137795 0.69 0.89966
Target:  5'- gCUCGGCGgGCcgCGCGuccGGCGGcCGu -3'
miRNA:   3'- -GAGCCGCgUGa-GCGUuu-UCGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 122032 0.69 0.893278
Target:  5'- aUCGGCGCucgCGCAcgcccGGGGCGGcgUCGGc -3'
miRNA:   3'- gAGCCGCGugaGCGU-----UUUCGCC--AGCU- -5'
9205 5' -55.1 NC_002512.2 + 92015 0.69 0.893278
Target:  5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3'
miRNA:   3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 80579 0.69 0.886678
Target:  5'- -gCGGCGaGCcCGCGc-GGCGGUCGAc -3'
miRNA:   3'- gaGCCGCgUGaGCGUuuUCGCCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.