miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9205 5' -55.1 NC_002512.2 + 71968 0.72 0.772402
Target:  5'- --aGGUGUACUCGCAGuuggggaacauGCGGUCGu -3'
miRNA:   3'- gagCCGCGUGAGCGUUuu---------CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 67741 0.67 0.951073
Target:  5'- gUCGGCGUGCcggccUCGCGAGccGgGGUCGu -3'
miRNA:   3'- gAGCCGCGUG-----AGCGUUUu-CgCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 69906 0.66 0.965405
Target:  5'- cCUCGuaGCACUgGU---AGCaGGUCGAg -3'
miRNA:   3'- -GAGCcgCGUGAgCGuuuUCG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 139788 0.66 0.965088
Target:  5'- -cCGGCGCACccUCcaggccgGCGGGGGCcucGGUCGGg -3'
miRNA:   3'- gaGCCGCGUG--AG-------CGUUUUCG---CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 124380 0.67 0.946949
Target:  5'- -aCGGCGUcCUgCGCGAGAGgcUGGUCGu -3'
miRNA:   3'- gaGCCGCGuGA-GCGUUUUC--GCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 92015 0.69 0.893278
Target:  5'- -gCGGCGgACUCGCG--GGC-GUCGGg -3'
miRNA:   3'- gaGCCGCgUGAGCGUuuUCGcCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 37293 0.72 0.755731
Target:  5'- -gCGGCGCGC-CGCAGcAGCGGgaCGGu -3'
miRNA:   3'- gaGCCGCGUGaGCGUUuUCGCCa-GCU- -5'
9205 5' -55.1 NC_002512.2 + 123668 0.72 0.755731
Target:  5'- -gCGGcCGgGCUCGgGGAAGCGGUCc- -3'
miRNA:   3'- gaGCC-GCgUGAGCgUUUUCGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 45273 0.68 0.917467
Target:  5'- -gCGGgGCGCUCGCGcucgucucGCgGGUCGGa -3'
miRNA:   3'- gaGCCgCGUGAGCGUuuu-----CG-CCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 106231 0.68 0.933232
Target:  5'- -gCGGCGCGCgCGCGGGAaccGCGG-CGc -3'
miRNA:   3'- gaGCCGCGUGaGCGUUUU---CGCCaGCu -5'
9205 5' -55.1 NC_002512.2 + 3601 0.68 0.933232
Target:  5'- uCUCGGgGaCAggCGCAGAGcccGCGGUCGu -3'
miRNA:   3'- -GAGCCgC-GUgaGCGUUUU---CGCCAGCu -5'
9205 5' -55.1 NC_002512.2 + 101122 0.69 0.90582
Target:  5'- -gCGGCGUgcGCUCGCGc-AGCGcGUCGu -3'
miRNA:   3'- gaGCCGCG--UGAGCGUuuUCGC-CAGCu -5'
9205 5' -55.1 NC_002512.2 + 79945 0.71 0.809709
Target:  5'- -gCGGCGCggggguccgccuGC-CGuCGGAAGCGGUCGGc -3'
miRNA:   3'- gaGCCGCG------------UGaGC-GUUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 123827 0.67 0.958664
Target:  5'- --aGGCGCugUCGCAcGAucugcgcccGCGG-CGAc -3'
miRNA:   3'- gagCCGCGugAGCGUuUU---------CGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 104279 0.67 0.954977
Target:  5'- -cCGGCGUcuuuCUCGCGuccGGCGG-CGGg -3'
miRNA:   3'- gaGCCGCGu---GAGCGUuu-UCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 86578 0.67 0.946525
Target:  5'- cCUUGGUccguccuuCGCUCGCcgcgauggucgggGGGAGCGGUCGGu -3'
miRNA:   3'- -GAGCCGc-------GUGAGCG-------------UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 38881 0.66 0.962139
Target:  5'- cCUCGGUccGCGCggGCAGuacGCGGUCu- -3'
miRNA:   3'- -GAGCCG--CGUGagCGUUuu-CGCCAGcu -5'
9205 5' -55.1 NC_002512.2 + 107065 0.66 0.976494
Target:  5'- -gCGGCcucCAuCUCGUucucGGGGGCGGUCGGg -3'
miRNA:   3'- gaGCCGc--GU-GAGCG----UUUUCGCCAGCU- -5'
9205 5' -55.1 NC_002512.2 + 21060 0.66 0.965405
Target:  5'- -gCGGCGCGUgagggCGCAcgGGCGG-CGGu -3'
miRNA:   3'- gaGCCGCGUGa----GCGUuuUCGCCaGCU- -5'
9205 5' -55.1 NC_002512.2 + 99085 0.66 0.962139
Target:  5'- cCUCGGC-CAC-CGCGugcuGCGcGUCGGc -3'
miRNA:   3'- -GAGCCGcGUGaGCGUuuu-CGC-CAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.