miRNA display CGI


Results 1 - 20 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9207 3' -60.6 NC_002512.2 + 283 0.66 0.833803
Target:  5'- gCGgcgCGACGGGGGgccagggcagccCACGCCcucCGGCCu -3'
miRNA:   3'- aGUa--GCUGUCCCC------------GUGCGGc--GUCGGc -5'
9207 3' -60.6 NC_002512.2 + 59044 0.66 0.833803
Target:  5'- aCAcUCGACGuccGGGucGC-CGCCGCuGCCGc -3'
miRNA:   3'- aGU-AGCUGU---CCC--CGuGCGGCGuCGGC- -5'
9207 3' -60.6 NC_002512.2 + 103349 0.66 0.833803
Target:  5'- gCGUCGACGaguccGGGGC-CGCgGUcgGGUCGu -3'
miRNA:   3'- aGUAGCUGU-----CCCCGuGCGgCG--UCGGC- -5'
9207 3' -60.6 NC_002512.2 + 36882 0.66 0.833803
Target:  5'- -gGUgGGCAGGgcGGCGC-CCGCGGUCc -3'
miRNA:   3'- agUAgCUGUCC--CCGUGcGGCGUCGGc -5'
9207 3' -60.6 NC_002512.2 + 229686 0.66 0.833803
Target:  5'- gCGgcgCGACGGGGGgccagggcagccCACGCCcucCGGCCu -3'
miRNA:   3'- aGUa--GCUGUCCCC------------GUGCGGc--GUCGGc -5'
9207 3' -60.6 NC_002512.2 + 122031 0.66 0.833019
Target:  5'- -gAUCGGCGcucgcgcacgcccGGGGCgGCGUCGgCGGCUGu -3'
miRNA:   3'- agUAGCUGU-------------CCCCG-UGCGGC-GUCGGC- -5'
9207 3' -60.6 NC_002512.2 + 84633 0.66 0.831446
Target:  5'- gUCGUCGucCAGGcGGCGgcccaggaaguucuCGUCGC-GCCGg -3'
miRNA:   3'- -AGUAGCu-GUCC-CCGU--------------GCGGCGuCGGC- -5'
9207 3' -60.6 NC_002512.2 + 102170 0.66 0.826691
Target:  5'- gUCGUCGAUcgcuuccccgcccugAGcgaggaggagaagcGGGagauCGCCGCGGCCGg -3'
miRNA:   3'- -AGUAGCUG---------------UC--------------CCCgu--GCGGCGUCGGC- -5'
9207 3' -60.6 NC_002512.2 + 185336 0.66 0.825893
Target:  5'- gCGUCGccgccCGGGuGGC-CGCCGCcaucGCCGu -3'
miRNA:   3'- aGUAGCu----GUCC-CCGuGCGGCGu---CGGC- -5'
9207 3' -60.6 NC_002512.2 + 72790 0.66 0.825893
Target:  5'- aCGUCGcCGGgacGGGCcCGCCGUgggcGCCGg -3'
miRNA:   3'- aGUAGCuGUC---CCCGuGCGGCGu---CGGC- -5'
9207 3' -60.6 NC_002512.2 + 125006 0.66 0.825893
Target:  5'- gCAUCGGggcCAGGGaCGC-CCGCggGGCCGa -3'
miRNA:   3'- aGUAGCU---GUCCCcGUGcGGCG--UCGGC- -5'
9207 3' -60.6 NC_002512.2 + 169055 0.66 0.825893
Target:  5'- cUCcUCGggcGCgAGGGGCuccgcggcggcgGCGUCGCGGCCc -3'
miRNA:   3'- -AGuAGC---UG-UCCCCG------------UGCGGCGUCGGc -5'
9207 3' -60.6 NC_002512.2 + 206859 0.66 0.825893
Target:  5'- aUCuUCuuCGGGGGCgGCGCCGagcucGCCGa -3'
miRNA:   3'- -AGuAGcuGUCCCCG-UGCGGCgu---CGGC- -5'
9207 3' -60.6 NC_002512.2 + 99028 0.66 0.817826
Target:  5'- gCGUCGGCGaGGGCGCcUCGUAcuucGCCGg -3'
miRNA:   3'- aGUAGCUGUcCCCGUGcGGCGU----CGGC- -5'
9207 3' -60.6 NC_002512.2 + 99105 0.66 0.817826
Target:  5'- gCGUCGGCGGcccuccucGuGGUccGCGCCGCGGCg- -3'
miRNA:   3'- aGUAGCUGUC--------C-CCG--UGCGGCGUCGgc -5'
9207 3' -60.6 NC_002512.2 + 44336 0.66 0.817826
Target:  5'- --cUCGACGGc--CACGCCGCggGGCCGg -3'
miRNA:   3'- aguAGCUGUCcccGUGCGGCG--UCGGC- -5'
9207 3' -60.6 NC_002512.2 + 93267 0.66 0.817826
Target:  5'- -gGUUGuacaGCAGGGGCACGggcaUGCGGaCCGu -3'
miRNA:   3'- agUAGC----UGUCCCCGUGCg---GCGUC-GGC- -5'
9207 3' -60.6 NC_002512.2 + 110495 0.66 0.817826
Target:  5'- cCGUCGGCGucauguucGGGuugcggccGCGCGCCGCGagcgagucGCCGu -3'
miRNA:   3'- aGUAGCUGU--------CCC--------CGUGCGGCGU--------CGGC- -5'
9207 3' -60.6 NC_002512.2 + 227704 0.66 0.817826
Target:  5'- aCggCGGCGGGGGCGCGgUaCGGUCc -3'
miRNA:   3'- aGuaGCUGUCCCCGUGCgGcGUCGGc -5'
9207 3' -60.6 NC_002512.2 + 211343 0.66 0.817826
Target:  5'- ----gGGCGcuGGGGgACGCgCGCGGCCu -3'
miRNA:   3'- aguagCUGU--CCCCgUGCG-GCGUCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.