miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9207 5' -56.8 NC_002512.2 + 128050 0.66 0.952816
Target:  5'- -aCGGCCcCGacGGUCGcgGCGUCgUCGUGa -3'
miRNA:   3'- agGCCGGcGU--CCAGCa-UGUAG-AGCAC- -5'
9207 5' -56.8 NC_002512.2 + 122684 0.66 0.952816
Target:  5'- cCCGGCCGCGgcccggcuGGUgccCGUGCAcgUCGUc -3'
miRNA:   3'- aGGCCGGCGU--------CCA---GCAUGUagAGCAc -5'
9207 5' -56.8 NC_002512.2 + 80898 0.66 0.952816
Target:  5'- cCCGGCCGguGGUUcaggugGUGgGUCgcgCGg- -3'
miRNA:   3'- aGGCCGGCguCCAG------CAUgUAGa--GCac -5'
9207 5' -56.8 NC_002512.2 + 113538 0.66 0.952816
Target:  5'- aCCaGGCCGCGGGccgCGUugaACGcCUgGUGg -3'
miRNA:   3'- aGG-CCGGCGUCCa--GCA---UGUaGAgCAC- -5'
9207 5' -56.8 NC_002512.2 + 44746 0.66 0.952816
Target:  5'- gCCGguuagaguGCCGCAGcauGUCGgagaccguCAUCUCGUGc -3'
miRNA:   3'- aGGC--------CGGCGUC---CAGCau------GUAGAGCAC- -5'
9207 5' -56.8 NC_002512.2 + 116380 0.66 0.951649
Target:  5'- gCUGGCCcugcgguccccgggGCGGGUCGcccugACGccCUCGUGg -3'
miRNA:   3'- aGGCCGG--------------CGUCCAGCa----UGUa-GAGCAC- -5'
9207 5' -56.8 NC_002512.2 + 182358 0.66 0.94885
Target:  5'- cCCGGCUGCuGGaucUCGUGgAUgUCGgUGg -3'
miRNA:   3'- aGGCCGGCGuCC---AGCAUgUAgAGC-AC- -5'
9207 5' -56.8 NC_002512.2 + 196267 0.66 0.94885
Target:  5'- aCCGGUCGCGGcGgaagcgCGgacgGCAUCUUGa- -3'
miRNA:   3'- aGGCCGGCGUC-Ca-----GCa---UGUAGAGCac -5'
9207 5' -56.8 NC_002512.2 + 173815 0.66 0.94885
Target:  5'- cUCCuGCgUGCGGGUC-UGCAccUCUUGUGg -3'
miRNA:   3'- -AGGcCG-GCGUCCAGcAUGU--AGAGCAC- -5'
9207 5' -56.8 NC_002512.2 + 41567 0.66 0.94885
Target:  5'- -gUGGCgCGCAGGUUcUugAcCUCGUGg -3'
miRNA:   3'- agGCCG-GCGUCCAGcAugUaGAGCAC- -5'
9207 5' -56.8 NC_002512.2 + 108609 0.66 0.94885
Target:  5'- -gCGGCCGCGGGccCGUccCGUCUCu-- -3'
miRNA:   3'- agGCCGGCGUCCa-GCAu-GUAGAGcac -5'
9207 5' -56.8 NC_002512.2 + 151983 0.66 0.94885
Target:  5'- aCCGGCCGU-GGUCGguucuagACAUUUgGg- -3'
miRNA:   3'- aGGCCGGCGuCCAGCa------UGUAGAgCac -5'
9207 5' -56.8 NC_002512.2 + 152294 0.66 0.94885
Target:  5'- aCCGGCCGU-GGUCGguucuagACAUUUgGg- -3'
miRNA:   3'- aGGCCGGCGuCCAGCa------UGUAGAgCac -5'
9207 5' -56.8 NC_002512.2 + 200456 0.66 0.943372
Target:  5'- --aGGCCGCcguuuuucagcaacAGGUCGUAgGagUCGUGc -3'
miRNA:   3'- aggCCGGCG--------------UCCAGCAUgUagAGCAC- -5'
9207 5' -56.8 NC_002512.2 + 221956 0.66 0.94027
Target:  5'- cCCGGCCGCaacgaaaccggAGGUCGUucgaccggcgACAUaCgauaCGUGa -3'
miRNA:   3'- aGGCCGGCG-----------UCCAGCA----------UGUA-Ga---GCAC- -5'
9207 5' -56.8 NC_002512.2 + 127457 0.66 0.94027
Target:  5'- gUCCaGCUGgAGGUCGgGCAgaagcggUUCGUGg -3'
miRNA:   3'- -AGGcCGGCgUCCAGCaUGUa------GAGCAC- -5'
9207 5' -56.8 NC_002512.2 + 105259 0.66 0.94027
Target:  5'- cUCgGGCCaCAGGgccagCG-ACAUCUCGg- -3'
miRNA:   3'- -AGgCCGGcGUCCa----GCaUGUAGAGCac -5'
9207 5' -56.8 NC_002512.2 + 72999 0.66 0.935652
Target:  5'- -gCGGCCaGCGGGU-GUGCAUCcgcacgaagggCGUGg -3'
miRNA:   3'- agGCCGG-CGUCCAgCAUGUAGa----------GCAC- -5'
9207 5' -56.8 NC_002512.2 + 1832 0.66 0.935652
Target:  5'- cCCGcGCCGCAGccGUCcgcggGCGUCUCGc- -3'
miRNA:   3'- aGGC-CGGCGUC--CAGca---UGUAGAGCac -5'
9207 5' -56.8 NC_002512.2 + 113662 0.66 0.934223
Target:  5'- gCCGGCCGCgaGGGUgcgcgcgggucggaCGUuggcgccgaagaGCAUCUUGUa -3'
miRNA:   3'- aGGCCGGCG--UCCA--------------GCA------------UGUAGAGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.