miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9210 3' -59 NC_002512.2 + 223559 0.65 0.867209
Target:  5'- gCGCCCgguccccccgcgggCGGCGGCcaccucgACGUguACAGCa- -3'
miRNA:   3'- aGCGGG--------------GCCGCCG-------UGUAguUGUCGau -5'
9210 3' -59 NC_002512.2 + 118912 0.66 0.862847
Target:  5'- cUCGguCCaCCGGCGGCugcucguCAUCGACcGCg- -3'
miRNA:   3'- -AGC--GG-GGCCGCCGu------GUAGUUGuCGau -5'
9210 3' -59 NC_002512.2 + 110666 0.66 0.862847
Target:  5'- aCGCCa-GGuUGGCGauCAUCGACAGCg- -3'
miRNA:   3'- aGCGGggCC-GCCGU--GUAGUUGUCGau -5'
9210 3' -59 NC_002512.2 + 99089 0.66 0.862847
Target:  5'- -gGCCaCCGcGUGcuGCGCGUCGGCGGCc- -3'
miRNA:   3'- agCGG-GGC-CGC--CGUGUAGUUGUCGau -5'
9210 3' -59 NC_002512.2 + 37736 0.66 0.862847
Target:  5'- aCGUCaaGGCGGuCACGaCGACGGCc- -3'
miRNA:   3'- aGCGGggCCGCC-GUGUaGUUGUCGau -5'
9210 3' -59 NC_002512.2 + 87848 0.66 0.862847
Target:  5'- -gGCCCUcGCGGCGgGUCGcCGGCc- -3'
miRNA:   3'- agCGGGGcCGCCGUgUAGUuGUCGau -5'
9210 3' -59 NC_002512.2 + 100605 0.66 0.862847
Target:  5'- gCGCCCgCGGCucgaCGCA-CGACAGCUu -3'
miRNA:   3'- aGCGGG-GCCGcc--GUGUaGUUGUCGAu -5'
9210 3' -59 NC_002512.2 + 157091 0.66 0.862847
Target:  5'- gCGCCCaCGGCgGGCcCGUCc-CGGCg- -3'
miRNA:   3'- aGCGGG-GCCG-CCGuGUAGuuGUCGau -5'
9210 3' -59 NC_002512.2 + 158983 0.66 0.862847
Target:  5'- gCGgCCaCGGCGGgGCGgaggCGGCGGCc- -3'
miRNA:   3'- aGCgGG-GCCGCCgUGUa---GUUGUCGau -5'
9210 3' -59 NC_002512.2 + 189202 0.66 0.862847
Target:  5'- gUCGCCgCgGGCGGCAUGcUCGACGuCg- -3'
miRNA:   3'- -AGCGG-GgCCGCCGUGU-AGUUGUcGau -5'
9210 3' -59 NC_002512.2 + 180264 0.66 0.858415
Target:  5'- cUCGCCCggacgauccucauggCGGCGGCGuuccCGUCGcccucgacaggcGCAGCg- -3'
miRNA:   3'- -AGCGGG---------------GCCGCCGU----GUAGU------------UGUCGau -5'
9210 3' -59 NC_002512.2 + 71206 0.66 0.855421
Target:  5'- cCGUCCCGGcCGGC-CAUgAucuCGGCg- -3'
miRNA:   3'- aGCGGGGCC-GCCGuGUAgUu--GUCGau -5'
9210 3' -59 NC_002512.2 + 56270 0.66 0.855421
Target:  5'- cCGCCgCGGCGGagGCGcucccgcuacUCGACAuGCUGg -3'
miRNA:   3'- aGCGGgGCCGCCg-UGU----------AGUUGU-CGAU- -5'
9210 3' -59 NC_002512.2 + 4546 0.66 0.855421
Target:  5'- aCGgUgaGGCGGCGCGacCGACGGCUGc -3'
miRNA:   3'- aGCgGggCCGCCGUGUa-GUUGUCGAU- -5'
9210 3' -59 NC_002512.2 + 95655 0.66 0.855421
Target:  5'- cCGCCCC--CGGCACAgccucUCGugAGCg- -3'
miRNA:   3'- aGCGGGGccGCCGUGU-----AGUugUCGau -5'
9210 3' -59 NC_002512.2 + 154785 0.66 0.855421
Target:  5'- cCGCCa-GGCGGCgACGUCGagcccccgaaACGGCg- -3'
miRNA:   3'- aGCGGggCCGCCG-UGUAGU----------UGUCGau -5'
9210 3' -59 NC_002512.2 + 136100 0.66 0.855421
Target:  5'- cUCGCgCUGGCGGCGg--CcACAGCg- -3'
miRNA:   3'- -AGCGgGGCCGCCGUguaGuUGUCGau -5'
9210 3' -59 NC_002512.2 + 160976 0.66 0.855421
Target:  5'- -gGCCgCGGCGGC----CAGCAGCa- -3'
miRNA:   3'- agCGGgGCCGCCGuguaGUUGUCGau -5'
9210 3' -59 NC_002512.2 + 213432 0.66 0.855421
Target:  5'- cCGCCCgaGGCGGCccacaGCAUCAuauacucucACuGGCUGc -3'
miRNA:   3'- aGCGGGg-CCGCCG-----UGUAGU---------UG-UCGAU- -5'
9210 3' -59 NC_002512.2 + 7588 0.66 0.855421
Target:  5'- cCGCCuCCGGCGGCAgcgGUCGuagaggUAGCg- -3'
miRNA:   3'- aGCGG-GGCCGCCGUg--UAGUu-----GUCGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.