miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 3' -60.7 NC_002512.2 + 48114 0.66 0.778538
Target:  5'- cGGGCGCUGGaggaCGUGUGgAcgaacGCGGCg- -3'
miRNA:   3'- cCCUGCGACCg---GCACGCgU-----CGCUGau -5'
9211 3' -60.7 NC_002512.2 + 49671 0.66 0.778538
Target:  5'- cGGGGCGCgGGCCGgcaGC-CAGUG-Ca- -3'
miRNA:   3'- -CCCUGCGaCCGGCa--CGcGUCGCuGau -5'
9211 3' -60.7 NC_002512.2 + 27571 0.66 0.778538
Target:  5'- aGGaGugGCggagcGGCCcaaaaGCGCGGCGGCa- -3'
miRNA:   3'- -CC-CugCGa----CCGGca---CGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 130758 0.66 0.778538
Target:  5'- -cGACGauccGGCCGUGCGCgaucucuuggAGCGGCc- -3'
miRNA:   3'- ccCUGCga--CCGGCACGCG----------UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 53317 0.66 0.778538
Target:  5'- cGG-UGCUGGCCGUgaaccggcugGUGaCGGCGGCg- -3'
miRNA:   3'- cCCuGCGACCGGCA----------CGC-GUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 91388 0.66 0.769662
Target:  5'- -aGACGCUGcGgCGcUGCGUGGCGGCc- -3'
miRNA:   3'- ccCUGCGAC-CgGC-ACGCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 85494 0.66 0.769661
Target:  5'- aGGAucaCGUUGGCCGUGuCGUacucGGUGGCg- -3'
miRNA:   3'- cCCU---GCGACCGGCAC-GCG----UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 112713 0.66 0.769661
Target:  5'- cGGGugGUUGaucaggcagaaGCCGUuguacagcacguGCuGCAGCGACUc -3'
miRNA:   3'- -CCCugCGAC-----------CGGCA------------CG-CGUCGCUGAu -5'
9211 3' -60.7 NC_002512.2 + 82345 0.66 0.769661
Target:  5'- cGGGuaGCGgUGGgCGUGCGgGGgCGGCg- -3'
miRNA:   3'- -CCC--UGCgACCgGCACGCgUC-GCUGau -5'
9211 3' -60.7 NC_002512.2 + 152403 0.66 0.769661
Target:  5'- -cGACGCgGGCgagCGUGCGCgggauccccGGCGACg- -3'
miRNA:   3'- ccCUGCGaCCG---GCACGCG---------UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 155613 0.67 0.760675
Target:  5'- gGGGACGUgcgGcGCCuGUGCGaggagagcCGGCGGCg- -3'
miRNA:   3'- -CCCUGCGa--C-CGG-CACGC--------GUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 134901 0.67 0.758865
Target:  5'- cGGACGCgcaccuguacgcGGaCCG-GCGCGGCGuCUGu -3'
miRNA:   3'- cCCUGCGa-----------CC-GGCaCGCGUCGCuGAU- -5'
9211 3' -60.7 NC_002512.2 + 223956 0.67 0.757959
Target:  5'- gGGGACGguuccggcgcgaggaCUGGCCGUaucccccGCGCgccccgccguccacgAGCGACg- -3'
miRNA:   3'- -CCCUGC---------------GACCGGCA-------CGCG---------------UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 92942 0.67 0.751585
Target:  5'- gGGGGCcCUGGagGUGCaCAGCGACc- -3'
miRNA:   3'- -CCCUGcGACCggCACGcGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 52307 0.67 0.751585
Target:  5'- cGGaGACGCUGGC---GCGCauccuGGCGACg- -3'
miRNA:   3'- -CC-CUGCGACCGgcaCGCG-----UCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 154645 0.67 0.751585
Target:  5'- cGGGACGC-GGCC--GCGCucgucaccGCGACg- -3'
miRNA:   3'- -CCCUGCGaCCGGcaCGCGu-------CGCUGau -5'
9211 3' -60.7 NC_002512.2 + 72070 0.67 0.751585
Target:  5'- aGGuCGC-GGCCGgccccCGCAGCGACc- -3'
miRNA:   3'- cCCuGCGaCCGGCac---GCGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 102753 0.67 0.742401
Target:  5'- cGGACuGUaGGCCGUGa-CGGCGACa- -3'
miRNA:   3'- cCCUG-CGaCCGGCACgcGUCGCUGau -5'
9211 3' -60.7 NC_002512.2 + 214636 0.67 0.742401
Target:  5'- gGGGACGCgGGCCGccuCGCAGUcucuccucccGGCg- -3'
miRNA:   3'- -CCCUGCGaCCGGCac-GCGUCG----------CUGau -5'
9211 3' -60.7 NC_002512.2 + 211788 0.67 0.742401
Target:  5'- cGGGugGCcgcgggGGCCGUccCGCcGCGGCg- -3'
miRNA:   3'- -CCCugCGa-----CCGGCAc-GCGuCGCUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.