miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9211 5' -55.1 NC_002512.2 + 110186 0.68 0.922101
Target:  5'- gGCCGgcCGCUucucGCGCGCaGGGGUGcgGg -3'
miRNA:   3'- gCGGCa-GCGA----UGCGUGcCUCUACuaC- -5'
9211 5' -55.1 NC_002512.2 + 141475 0.68 0.926857
Target:  5'- aGCCGUCGCgacCGaCACaucugagGGAGAUGGc- -3'
miRNA:   3'- gCGGCAGCGau-GC-GUG-------CCUCUACUac -5'
9211 5' -55.1 NC_002512.2 + 10432 0.68 0.927374
Target:  5'- gCGUCGUCGCcgucGgGCACGGGGgcGcgGa -3'
miRNA:   3'- -GCGGCAGCGa---UgCGUGCCUCuaCuaC- -5'
9211 5' -55.1 NC_002512.2 + 189240 0.68 0.932419
Target:  5'- uCGCCGUCGCggACGUcaccguCGGGGA-GAg- -3'
miRNA:   3'- -GCGGCAGCGa-UGCGu-----GCCUCUaCUac -5'
9211 5' -55.1 NC_002512.2 + 219934 0.68 0.937239
Target:  5'- -uCCGUCG--ACGCGCGGGGGagGGUGg -3'
miRNA:   3'- gcGGCAGCgaUGCGUGCCUCUa-CUAC- -5'
9211 5' -55.1 NC_002512.2 + 117997 0.68 0.937239
Target:  5'- cCGCuCGUCGUccAUGCACGG-GGUGGa- -3'
miRNA:   3'- -GCG-GCAGCGa-UGCGUGCCuCUACUac -5'
9211 5' -55.1 NC_002512.2 + 47902 0.68 0.941833
Target:  5'- aCGCCGcCacCUACGUGCGGAuGGUGAc- -3'
miRNA:   3'- -GCGGCaGc-GAUGCGUGCCU-CUACUac -5'
9211 5' -55.1 NC_002512.2 + 225150 0.68 0.941833
Target:  5'- cCGCCGUCGacgACGCAugccCGGAGccGGg- -3'
miRNA:   3'- -GCGGCAGCga-UGCGU----GCCUCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 88635 0.67 0.946203
Target:  5'- gCGCCacaCGUUGCGC-CGGuuguAGGUGAUGa -3'
miRNA:   3'- -GCGGca-GCGAUGCGuGCC----UCUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 50023 0.67 0.946204
Target:  5'- aCGUCGUCGUgacgguggGCGCgcacacGCGGGGGcUGGUGc -3'
miRNA:   3'- -GCGGCAGCGa-------UGCG------UGCCUCU-ACUAC- -5'
9211 5' -55.1 NC_002512.2 + 108577 0.67 0.950352
Target:  5'- uGCUGUCGCUGugguucCGgGCGGAGAg---- -3'
miRNA:   3'- gCGGCAGCGAU------GCgUGCCUCUacuac -5'
9211 5' -55.1 NC_002512.2 + 117067 0.67 0.950352
Target:  5'- uGCCGgagcaCGCgcagGCGC-UGGAGGUGcgGg -3'
miRNA:   3'- gCGGCa----GCGa---UGCGuGCCUCUACuaC- -5'
9211 5' -55.1 NC_002512.2 + 91390 0.67 0.950352
Target:  5'- aCGCUGcggCGCUGCGUgGCGGccAUGAUGa -3'
miRNA:   3'- -GCGGCa--GCGAUGCG-UGCCucUACUAC- -5'
9211 5' -55.1 NC_002512.2 + 33355 0.67 0.954281
Target:  5'- gGCuCGUCGUcACGCcucgUGGAGAacUGAUGg -3'
miRNA:   3'- gCG-GCAGCGaUGCGu---GCCUCU--ACUAC- -5'
9211 5' -55.1 NC_002512.2 + 82224 0.67 0.954281
Target:  5'- cCGUCGUCGCgccccCGCGaGGAGG-GAUGc -3'
miRNA:   3'- -GCGGCAGCGau---GCGUgCCUCUaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 79980 0.67 0.954281
Target:  5'- gGCCGagGaggGCGCGCGGAGGUc--- -3'
miRNA:   3'- gCGGCagCga-UGCGUGCCUCUAcuac -5'
9211 5' -55.1 NC_002512.2 + 117896 0.67 0.957995
Target:  5'- gGcCCGUCGCUGCuccacggccaGCGCGccacgugcGAGAUGAUc -3'
miRNA:   3'- gC-GGCAGCGAUG----------CGUGC--------CUCUACUAc -5'
9211 5' -55.1 NC_002512.2 + 121810 0.67 0.957995
Target:  5'- aCGUgGUggacaGC-ACGCACGGGGcgGGUGa -3'
miRNA:   3'- -GCGgCAg----CGaUGCGUGCCUCuaCUAC- -5'
9211 5' -55.1 NC_002512.2 + 82961 0.67 0.957995
Target:  5'- aGCagGUCGCgGCGCACGGcGcgGAa- -3'
miRNA:   3'- gCGg-CAGCGaUGCGUGCCuCuaCUac -5'
9211 5' -55.1 NC_002512.2 + 18201 0.67 0.957995
Target:  5'- uGCCGcaucaCGUcGCGCACGGuccGGAUGAg- -3'
miRNA:   3'- gCGGCa----GCGaUGCGUGCC---UCUACUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.