Results 161 - 180 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 203723 | 0.69 | 0.718758 |
Target: 5'- cGGCCuGCgacacggagacacgGGGCGGagauGAGCGGAUugGGu -3' miRNA: 3'- aCCGG-CGa-------------CCCGCU----CUCGCUUGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 149514 | 0.69 | 0.695887 |
Target: 5'- aGGCCGC--GGCcGGAGCGGGC-CGGc -3' miRNA: 3'- aCCGGCGacCCGcUCUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 9400 | 0.7 | 0.657201 |
Target: 5'- cGGCCucGCUgcGGGUGAG-GCGGACguagGCGAa -3' miRNA: 3'- aCCGG--CGA--CCCGCUCuCGCUUG----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 225802 | 0.7 | 0.647465 |
Target: 5'- gGGCCGC-GGGCGGccGGGUGGcCugGGa -3' miRNA: 3'- aCCGGCGaCCCGCU--CUCGCUuGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 120782 | 0.7 | 0.657201 |
Target: 5'- cGGCCGUc-GGCGGGGGCGGcgGgACGGc -3' miRNA: 3'- aCCGGCGacCCGCUCUCGCU--UgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 156478 | 0.7 | 0.608482 |
Target: 5'- gGGCgGCgggcucGGCGGGcugGGCGGACACGGc -3' miRNA: 3'- aCCGgCGac----CCGCUC---UCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 215168 | 0.7 | 0.608482 |
Target: 5'- cUGGCCGUccUGcuGCucgGGGAGCGGACGCGGg -3' miRNA: 3'- -ACCGGCG--ACc-CG---CUCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 90935 | 0.7 | 0.61822 |
Target: 5'- cGGgCGCgaccgGGGCGuGcGUGGGCGCGAc -3' miRNA: 3'- aCCgGCGa----CCCGCuCuCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 171854 | 0.7 | 0.61822 |
Target: 5'- cGGCCGCggccGGGaGGGGGCgGAACGCc- -3' miRNA: 3'- aCCGGCGa---CCCgCUCUCG-CUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 123531 | 0.7 | 0.637719 |
Target: 5'- gGGCCGCgagGuGGCGAGcucGCGGGacgaGCGAc -3' miRNA: 3'- aCCGGCGa--C-CCGCUCu--CGCUUg---UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 16019 | 0.7 | 0.608482 |
Target: 5'- cGGCCGCcGGGUGGGGaaGGGCAgCGGg -3' miRNA: 3'- aCCGGCGaCCCGCUCUcgCUUGU-GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 25415 | 0.7 | 0.61822 |
Target: 5'- aGGgCGUUacGGGCGuagacccGGGCGAACGCGGg -3' miRNA: 3'- aCCgGCGA--CCCGCu------CUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 2801 | 0.7 | 0.61822 |
Target: 5'- cGGCCgGCggccGGCGGGAcccggcGCGGGCGCGGg -3' miRNA: 3'- aCCGG-CGac--CCGCUCU------CGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 93386 | 0.7 | 0.61822 |
Target: 5'- gGGCCGCaGGGCGcGc-CGAACGCGu -3' miRNA: 3'- aCCGGCGaCCCGCuCucGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 74552 | 0.7 | 0.61822 |
Target: 5'- cGGCCGC-GGcGaCGGGAGCGAGguugGCGAg -3' miRNA: 3'- aCCGGCGaCC-C-GCUCUCGCUUg---UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 47025 | 0.7 | 0.627968 |
Target: 5'- gGaGCUGCUGGGCGAgcuGAG-GAaGCACGGg -3' miRNA: 3'- aC-CGGCGACCCGCU---CUCgCU-UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 38434 | 0.7 | 0.637719 |
Target: 5'- cGGCCcaccucaacGCcccGGGCG-GAGUGAACAUGAc -3' miRNA: 3'- aCCGG---------CGa--CCCGCuCUCGCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 15646 | 0.7 | 0.637719 |
Target: 5'- cGGCCGC-GGGCG---GCGAGCcgACGAg -3' miRNA: 3'- aCCGGCGaCCCGCucuCGCUUG--UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130852 | 0.7 | 0.647465 |
Target: 5'- cGGCgGUcGGGCGAGGcccccacCGGGCGCGAg -3' miRNA: 3'- aCCGgCGaCCCGCUCUc------GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 14485 | 0.7 | 0.657201 |
Target: 5'- gGGCCa--GGGC-AGGGCGAACAUGGu -3' miRNA: 3'- aCCGGcgaCCCGcUCUCGCUUGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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