Results 101 - 120 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 118789 | 0.68 | 0.721592 |
Target: 5'- -cGCCGCcGGGCGGGAGCuguGGGCccccgucguggucgGCGAc -3' miRNA: 3'- acCGGCGaCCCGCUCUCG---CUUG--------------UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 135357 | 0.68 | 0.721592 |
Target: 5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3' miRNA: 3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 194048 | 0.68 | 0.724419 |
Target: 5'- aGGCCGcCUGgcuGGUGAGGGCGcACAaGAc -3' miRNA: 3'- aCCGGC-GAC---CCGCUCUCGCuUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 191528 | 0.68 | 0.724419 |
Target: 5'- aGGCCGUggggucGGGCGAcccGGCGGAucccCGCGAu -3' miRNA: 3'- aCCGGCGa-----CCCGCUc--UCGCUU----GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 153377 | 0.68 | 0.733797 |
Target: 5'- cGGCgGCU-GGCGguccGGAGCGAcguggaGCGCGGc -3' miRNA: 3'- aCCGgCGAcCCGC----UCUCGCU------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 6321 | 0.68 | 0.743094 |
Target: 5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3' miRNA: 3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 129211 | 0.68 | 0.743094 |
Target: 5'- -cGCCGCUGGccGCgGAGAaCGAACGCGc -3' miRNA: 3'- acCGGCGACC--CG-CUCUcGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 107849 | 0.68 | 0.743094 |
Target: 5'- -cGCCGCcccGGGCGuGcGCGAGCGcCGAu -3' miRNA: 3'- acCGGCGa--CCCGCuCuCGCUUGU-GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 186702 | 0.68 | 0.746788 |
Target: 5'- cGGCCuucgucugcggcggGUUGGGCGAGGagucggccaacgucGCGGGCACc- -3' miRNA: 3'- aCCGG--------------CGACCCGCUCU--------------CGCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 143555 | 0.68 | 0.750469 |
Target: 5'- cGGCCGCgcgucuccccgcGGGCGGGccGGCGGAgAgGGa -3' miRNA: 3'- aCCGGCGa-----------CCCGCUC--UCGCUUgUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 103324 | 0.68 | 0.752303 |
Target: 5'- cGGCCGaggcccGGGCGgcguagcccGGGGCGGacgGCACGGu -3' miRNA: 3'- aCCGGCga----CCCGC---------UCUCGCU---UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 111234 | 0.68 | 0.752303 |
Target: 5'- gGGCgGCcGGGCGcccGGAGCGucgggcggcACGCGGa -3' miRNA: 3'- aCCGgCGaCCCGC---UCUCGCu--------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 184640 | 0.68 | 0.752303 |
Target: 5'- cGGCCGac-GGCGAGuccGCGGGCGCc- -3' miRNA: 3'- aCCGGCgacCCGCUCu--CGCUUGUGcu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 122765 | 0.68 | 0.761416 |
Target: 5'- gGGCCGgaGGaCGAGGaCGAGgACGAg -3' miRNA: 3'- aCCGGCgaCCcGCUCUcGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 127102 | 0.68 | 0.761416 |
Target: 5'- cGGCgGCgGcGGCGGGAGaUGGGCGgGAu -3' miRNA: 3'- aCCGgCGaC-CCGCUCUC-GCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 115283 | 0.68 | 0.770425 |
Target: 5'- cUGGCCG--GGGUGAucGUGAGCACGc -3' miRNA: 3'- -ACCGGCgaCCCGCUcuCGCUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 166459 | 0.68 | 0.770425 |
Target: 5'- cGG-CGCcGGGCucGAGGGCGGGgACGGc -3' miRNA: 3'- aCCgGCGaCCCG--CUCUCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 222329 | 0.68 | 0.773998 |
Target: 5'- aGGCUGCgGcGGCGccuccaggaggaggaGGAGCG-GCACGGg -3' miRNA: 3'- aCCGGCGaC-CCGC---------------UCUCGCuUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 220536 | 0.68 | 0.724419 |
Target: 5'- gGaGCUGCUGcGCGAGGGCGu-CACGc -3' miRNA: 3'- aC-CGGCGACcCGCUCUCGCuuGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 96226 | 0.68 | 0.770425 |
Target: 5'- cGGCCGCgGcGGCGGcGGCGAcCGCc- -3' miRNA: 3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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