miRNA display CGI


Results 141 - 160 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 228966 0.67 0.805264
Target:  5'- gGGgCGgaGGGCGGGAGacgGAGCA-GAg -3'
miRNA:   3'- aCCgGCgaCCCGCUCUCg--CUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 227531 0.67 0.805264
Target:  5'- cGGCgGCggacgggGGGagGAGGGCGggUccGCGAc -3'
miRNA:   3'- aCCGgCGa------CCCg-CUCUCGCuuG--UGCU- -5'
9212 5' -59.5 NC_002512.2 + 227097 0.67 0.804419
Target:  5'- cGGCCGCcggccGGGUcgggcucagacggGGGAGCGggUGCa- -3'
miRNA:   3'- aCCGGCGa----CCCG-------------CUCUCGCuuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 103693 0.67 0.796749
Target:  5'- gGGCgGCggacGcGGCGGGAGgGGGCGCc- -3'
miRNA:   3'- aCCGgCGa---C-CCGCUCUCgCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 224151 0.67 0.796749
Target:  5'- aGGCggaCGCgugaggcgGGGCGGGGGC--GCGCGGa -3'
miRNA:   3'- aCCG---GCGa-------CCCGCUCUCGcuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 201767 0.67 0.796749
Target:  5'- gGGaCgGgaGGGaCGAGGGUGAgaGCGCGGa -3'
miRNA:   3'- aCC-GgCgaCCC-GCUCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 178502 0.67 0.796749
Target:  5'- uUGGCCGCcuccaGGGCucuGAGGGCGucCGCc- -3'
miRNA:   3'- -ACCGGCGa----CCCG---CUCUCGCuuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 93051 0.67 0.812806
Target:  5'- cGGCUGCUGccccaGGCgcuguaccgggacGAGAGCGAgagccGCGCGu -3'
miRNA:   3'- aCCGGCGAC-----CCG-------------CUCUCGCU-----UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 226726 0.67 0.788099
Target:  5'- aGGCCGC-GGGCGAcgacGGCgGGAC-CGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUc---UCG-CUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 202774 0.67 0.813637
Target:  5'- gUGGaaGUUGGGCaccacccGAGCGAGCAUGc -3'
miRNA:   3'- -ACCggCGACCCGcu-----CUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 7374 0.67 0.788099
Target:  5'- cGGCCGCggcGGGCGgccAGGcGCaGAAgGCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGC---UCU-CG-CUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 108398 0.67 0.788099
Target:  5'- aGcCCGgUGGGUGGGGGgGAGgACGGg -3'
miRNA:   3'- aCcGGCgACCCGCUCUCgCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 78396 0.67 0.796749
Target:  5'- aGGCCgGCUGGagauCGAGAGCGcGGgAUGAc -3'
miRNA:   3'- aCCGG-CGACCc---GCUCUCGC-UUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 219050 0.67 0.779322
Target:  5'- cGGCCGC-GGcGCGGGGcuccccGCGGGCuuCGAg -3'
miRNA:   3'- aCCGGCGaCC-CGCUCU------CGCUUGu-GCU- -5'
9212 5' -59.5 NC_002512.2 + 188637 0.67 0.788099
Target:  5'- gGGCCGCaaGGGCGccGGCGGcgGCGGc -3'
miRNA:   3'- aCCGGCGa-CCCGCucUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 224974 0.67 0.788099
Target:  5'- --cCCGCUGGGCGGcGGCGGcgGCGCc- -3'
miRNA:   3'- accGGCGACCCGCUcUCGCU--UGUGcu -5'
9212 5' -59.5 NC_002512.2 + 226235 0.67 0.82186
Target:  5'- cGGCCGCgaggGGGCcGGAG-GAGgAgGAg -3'
miRNA:   3'- aCCGGCGa---CCCGcUCUCgCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 219837 0.67 0.821045
Target:  5'- cGGUCGggGGGUccggcccGGGGGCGGAuCGCGGa -3'
miRNA:   3'- aCCGGCgaCCCG-------CUCUCGCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 155871 0.67 0.813637
Target:  5'- cGGCCacGCUGuucguccccgacGGCGGGcGCGGGgACGAg -3'
miRNA:   3'- aCCGG--CGAC------------CCGCUCuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 100071 0.67 0.796749
Target:  5'- gGGCCGCgggccgGGGaCG-GAGCGGuCAgGGg -3'
miRNA:   3'- aCCGGCGa-----CCC-GCuCUCGCUuGUgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.