Results 81 - 100 of 233 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9212 | 5' | -59.5 | NC_002512.2 | + | 16463 | 0.69 | 0.686269 |
Target: 5'- gGGCCGCcucGGGCGgagacgacAGAGCGuAugGCGc -3' miRNA: 3'- aCCGGCGa--CCCGC--------UCUCGC-UugUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 200788 | 0.69 | 0.694927 |
Target: 5'- aUGGCCGCcGccgccgaagacgaGGCGGGAcGCGAcggcauggACGCGAa -3' miRNA: 3'- -ACCGGCGaC-------------CCGCUCU-CGCU--------UGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 170406 | 0.69 | 0.695887 |
Target: 5'- aGGCCGCUcgagacccgcuGGCGAGGGCcucGGAUACGu -3' miRNA: 3'- aCCGGCGAc----------CCGCUCUCG---CUUGUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 149514 | 0.69 | 0.695887 |
Target: 5'- aGGCCGC--GGCcGGAGCGGGC-CGGc -3' miRNA: 3'- aCCGGCGacCCGcUCUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 130149 | 0.69 | 0.705457 |
Target: 5'- cGGCCGCgGGGCccGGcGGCGGGC-CGGc -3' miRNA: 3'- aCCGGCGaCCCG--CUcUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 227995 | 0.69 | 0.705457 |
Target: 5'- gGGCCGa-GGGCcGGAGCcggacgGGACGCGGg -3' miRNA: 3'- aCCGGCgaCCCGcUCUCG------CUUGUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 11460 | 0.69 | 0.71497 |
Target: 5'- gGGCCGgggaagGGGCgGAGAccGCGAGgACGAc -3' miRNA: 3'- aCCGGCga----CCCG-CUCU--CGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 190551 | 0.69 | 0.71497 |
Target: 5'- cGGCUGCUGGGCaccGAG-GCGGccgucuuccACAcCGAc -3' miRNA: 3'- aCCGGCGACCCG---CUCuCGCU---------UGU-GCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 4221 | 0.69 | 0.71497 |
Target: 5'- cGGCCGCggGGaGCGGGAcGuCGAGCcccgACGGg -3' miRNA: 3'- aCCGGCGa-CC-CGCUCU-C-GCUUG----UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 203723 | 0.69 | 0.718758 |
Target: 5'- cGGCCuGCgacacggagacacgGGGCGGagauGAGCGGAUugGGu -3' miRNA: 3'- aCCGG-CGa-------------CCCGCU----CUCGCUUGugCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 121885 | 0.69 | 0.718758 |
Target: 5'- aGGUCGCggGGGaCGcucggcgacgcgcggGGAGCGAGCGgGAc -3' miRNA: 3'- aCCGGCGa-CCC-GC---------------UCUCGCUUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 118789 | 0.68 | 0.721592 |
Target: 5'- -cGCCGCcGGGCGGGAGCuguGGGCccccgucguggucgGCGAc -3' miRNA: 3'- acCGGCGaCCCGCUCUCG---CUUG--------------UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 135357 | 0.68 | 0.721592 |
Target: 5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3' miRNA: 3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 191528 | 0.68 | 0.724419 |
Target: 5'- aGGCCGUggggucGGGCGAcccGGCGGAucccCGCGAu -3' miRNA: 3'- aCCGGCGa-----CCCGCUc--UCGCUU----GUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 36676 | 0.68 | 0.724419 |
Target: 5'- aGGCUGCcGGGCaacGGCGAGC-CGAa -3' miRNA: 3'- aCCGGCGaCCCGcucUCGCUUGuGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 154561 | 0.68 | 0.724419 |
Target: 5'- cGGUCGCcaUGGGgGGGcaggauaacGGCGAGgGCGAc -3' miRNA: 3'- aCCGGCG--ACCCgCUC---------UCGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 69 | 0.68 | 0.724419 |
Target: 5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3' miRNA: 3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 194048 | 0.68 | 0.724419 |
Target: 5'- aGGCCGcCUGgcuGGUGAGGGCGcACAaGAc -3' miRNA: 3'- aCCGGC-GAC---CCGCUCUCGCuUGUgCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 128197 | 0.68 | 0.724419 |
Target: 5'- gGGCCGCc-GGCGGGAcCGGGgACGGg -3' miRNA: 3'- aCCGGCGacCCGCUCUcGCUUgUGCU- -5' |
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9212 | 5' | -59.5 | NC_002512.2 | + | 220536 | 0.68 | 0.724419 |
Target: 5'- gGaGCUGCUGcGCGAGGGCGu-CACGc -3' miRNA: 3'- aC-CGGCGACcCGCUCUCGCuuGUGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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