miRNA display CGI


Results 101 - 120 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 220536 0.68 0.724419
Target:  5'- gGaGCUGCUGcGCGAGGGCGu-CACGc -3'
miRNA:   3'- aC-CGGCGACcCGCUCUCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 22178 0.68 0.733797
Target:  5'- cGG-CGCU-GGCGAuGGCGAugACGAu -3'
miRNA:   3'- aCCgGCGAcCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 153377 0.68 0.733797
Target:  5'- cGGCgGCU-GGCGguccGGAGCGAcguggaGCGCGGc -3'
miRNA:   3'- aCCGgCGAcCCGC----UCUCGCU------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 82333 0.68 0.737526
Target:  5'- gGGCCGCcccggcggguagcggUGGGCGu--GCGGGgGCGGc -3'
miRNA:   3'- aCCGGCG---------------ACCCGCucuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 130251 0.68 0.743094
Target:  5'- cGGgCGCcGGGCccuccGAGGGCGAcgaccgcgacgaGCGCGGg -3'
miRNA:   3'- aCCgGCGaCCCG-----CUCUCGCU------------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 129211 0.68 0.743094
Target:  5'- -cGCCGCUGGccGCgGAGAaCGAACGCGc -3'
miRNA:   3'- acCGGCGACC--CG-CUCUcGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 54424 0.68 0.743094
Target:  5'- cGGCCuGCUGGGgGAagaggacaGGGgGAccgGCACGGu -3'
miRNA:   3'- aCCGG-CGACCCgCU--------CUCgCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 6321 0.68 0.743094
Target:  5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3'
miRNA:   3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 9881 0.68 0.743094
Target:  5'- cGGCCucucgacccGCcGGGCGAGGGgGAGCGa-- -3'
miRNA:   3'- aCCGG---------CGaCCCGCUCUCgCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 107849 0.68 0.743094
Target:  5'- -cGCCGCcccGGGCGuGcGCGAGCGcCGAu -3'
miRNA:   3'- acCGGCGa--CCCGCuCuCGCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 206337 0.68 0.743094
Target:  5'- gUGGCaCGUcGGGUuGGuGGCGAACAUGAu -3'
miRNA:   3'- -ACCG-GCGaCCCGcUC-UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 186702 0.68 0.746788
Target:  5'- cGGCCuucgucugcggcggGUUGGGCGAGGagucggccaacgucGCGGGCACc- -3'
miRNA:   3'- aCCGG--------------CGACCCGCUCU--------------CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 143555 0.68 0.750469
Target:  5'- cGGCCGCgcgucuccccgcGGGCGGGccGGCGGAgAgGGa -3'
miRNA:   3'- aCCGGCGa-----------CCCGCUC--UCGCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 226985 0.68 0.752303
Target:  5'- gGGCgGCgucuuagcagaGGGUGAGGcggcGCGAGCugGAg -3'
miRNA:   3'- aCCGgCGa----------CCCGCUCU----CGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 27977 0.68 0.752303
Target:  5'- gGGCgGCcGGGCGAGAuucCG-GCGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUc--GCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 184640 0.68 0.752303
Target:  5'- cGGCCGac-GGCGAGuccGCGGGCGCc- -3'
miRNA:   3'- aCCGGCgacCCGCUCu--CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 111234 0.68 0.752303
Target:  5'- gGGCgGCcGGGCGcccGGAGCGucgggcggcACGCGGa -3'
miRNA:   3'- aCCGgCGaCCCGC---UCUCGCu--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 103324 0.68 0.752303
Target:  5'- cGGCCGaggcccGGGCGgcguagcccGGGGCGGacgGCACGGu -3'
miRNA:   3'- aCCGGCga----CCCGC---------UCUCGCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 127102 0.68 0.761416
Target:  5'- cGGCgGCgGcGGCGGGAGaUGGGCGgGAu -3'
miRNA:   3'- aCCGgCGaC-CCGCUCUC-GCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 122765 0.68 0.761416
Target:  5'- gGGCCGgaGGaCGAGGaCGAGgACGAg -3'
miRNA:   3'- aCCGGCgaCCcGCUCUcGCUUgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.