miRNA display CGI


Results 121 - 140 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 96226 0.68 0.770425
Target:  5'- cGGCCGCgGcGGCGGcGGCGAcCGCc- -3'
miRNA:   3'- aCCGGCGaC-CCGCUcUCGCUuGUGcu -5'
9212 5' -59.5 NC_002512.2 + 166459 0.68 0.770425
Target:  5'- cGG-CGCcGGGCucGAGGGCGGGgACGGc -3'
miRNA:   3'- aCCgGCGaCCCG--CUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 115283 0.68 0.770425
Target:  5'- cUGGCCG--GGGUGAucGUGAGCACGc -3'
miRNA:   3'- -ACCGGCgaCCCGCUcuCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 34939 0.68 0.770425
Target:  5'- gGGUCGCggcgacggGGaGCG-GAGCGGcCGCGAc -3'
miRNA:   3'- aCCGGCGa-------CC-CGCuCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 13692 0.68 0.770425
Target:  5'- cGGCCGCgGcGGUGAucaCGGGCGCGAu -3'
miRNA:   3'- aCCGGCGaC-CCGCUcucGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 222329 0.68 0.773998
Target:  5'- aGGCUGCgGcGGCGccuccaggaggaggaGGAGCG-GCACGGg -3'
miRNA:   3'- aCCGGCGaC-CCGC---------------UCUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 28056 0.67 0.775777
Target:  5'- cGGCCGCggaaggagcccccGGGCGc-GGCGGAgACGGc -3'
miRNA:   3'- aCCGGCGa------------CCCGCucUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 125391 0.67 0.776665
Target:  5'- cGGaCGCUuccugaaccuccccGGGCccGAGGGCGAACgACGAc -3'
miRNA:   3'- aCCgGCGA--------------CCCG--CUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 96618 0.67 0.779322
Target:  5'- cGGagaCGC-GGGgGAGGGCGAGgaaacCGCGAc -3'
miRNA:   3'- aCCg--GCGaCCCgCUCUCGCUU-----GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 202526 0.67 0.779322
Target:  5'- aGGCgGC--GGCGGGGGCGGACGa-- -3'
miRNA:   3'- aCCGgCGacCCGCUCUCGCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 219050 0.67 0.779322
Target:  5'- cGGCCGC-GGcGCGGGGcuccccGCGGGCuuCGAg -3'
miRNA:   3'- aCCGGCGaCC-CGCUCU------CGCUUGu-GCU- -5'
9212 5' -59.5 NC_002512.2 + 53230 0.67 0.779322
Target:  5'- aGGCgCGCU-GGCGGGAGCuGGugAUGc -3'
miRNA:   3'- aCCG-GCGAcCCGCUCUCG-CUugUGCu -5'
9212 5' -59.5 NC_002512.2 + 136080 0.67 0.779322
Target:  5'- cGGCCGggGGGCcGGcuGCGGACGCc- -3'
miRNA:   3'- aCCGGCgaCCCGcUCu-CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 139277 0.67 0.779322
Target:  5'- cGGCgCGCggGGGCGAaGGgGGGCGCc- -3'
miRNA:   3'- aCCG-GCGa-CCCGCUcUCgCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 226726 0.67 0.788099
Target:  5'- aGGCCGC-GGGCGAcgacGGCgGGAC-CGGg -3'
miRNA:   3'- aCCGGCGaCCCGCUc---UCG-CUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 7374 0.67 0.788099
Target:  5'- cGGCCGCggcGGGCGgccAGGcGCaGAAgGCGGc -3'
miRNA:   3'- aCCGGCGa--CCCGC---UCU-CG-CUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 224974 0.67 0.788099
Target:  5'- --cCCGCUGGGCGGcGGCGGcgGCGCc- -3'
miRNA:   3'- accGGCGACCCGCUcUCGCU--UGUGcu -5'
9212 5' -59.5 NC_002512.2 + 188637 0.67 0.788099
Target:  5'- gGGCCGCaaGGGCGccGGCGGcgGCGGc -3'
miRNA:   3'- aCCGGCGa-CCCGCucUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105650 0.67 0.788099
Target:  5'- cGGCCGagguaGGGCGAGccgcAGCaGAcgGCGCGGu -3'
miRNA:   3'- aCCGGCga---CCCGCUC----UCG-CU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 108398 0.67 0.788099
Target:  5'- aGcCCGgUGGGUGGGGGgGAGgACGGg -3'
miRNA:   3'- aCcGGCgACCCGCUCUCgCUUgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.