miRNA display CGI


Results 161 - 180 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 175260 0.67 0.813637
Target:  5'- gGGCCGCgcucGGCGGGuagcuGGCGGcCGCGu -3'
miRNA:   3'- aCCGGCGac--CCGCUC-----UCGCUuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 31672 0.67 0.813637
Target:  5'- cGGCCGUgGuGGCGgacGGGGaggaGGACGCGGa -3'
miRNA:   3'- aCCGGCGaC-CCGC---UCUCg---CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 202774 0.67 0.813637
Target:  5'- gUGGaaGUUGGGCaccacccGAGCGAGCAUGc -3'
miRNA:   3'- -ACCggCGACCCGcu-----CUCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 155871 0.67 0.813637
Target:  5'- cGGCCacGCUGuucguccccgacGGCGGGcGCGGGgACGAg -3'
miRNA:   3'- aCCGG--CGAC------------CCGCUCuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 219837 0.67 0.821045
Target:  5'- cGGUCGggGGGUccggcccGGGGGCGGAuCGCGGa -3'
miRNA:   3'- aCCGGCgaCCCG-------CUCUCGCUU-GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 105870 0.67 0.82186
Target:  5'- gUGGCCcagGGGC-AGcGCGAACACGc -3'
miRNA:   3'- -ACCGGcgaCCCGcUCuCGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 127487 0.67 0.82186
Target:  5'- gUGGCCGCcgcccucGGGCGGGAGCa------- -3'
miRNA:   3'- -ACCGGCGa------CCCGCUCUCGcuugugcu -5'
9212 5' -59.5 NC_002512.2 + 111289 0.67 0.82186
Target:  5'- cGGCCGCcgcgGGGaGAGGGCcgccGAuCGCGGc -3'
miRNA:   3'- aCCGGCGa---CCCgCUCUCG----CUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 226235 0.67 0.82186
Target:  5'- cGGCCGCgaggGGGCcGGAG-GAGgAgGAg -3'
miRNA:   3'- aCCGGCGa---CCCGcUCUCgCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 98774 0.67 0.825106
Target:  5'- cUGGCCGUcgGGGgGcagcuguucaaugucAGAGCGugUACGAc -3'
miRNA:   3'- -ACCGGCGa-CCCgC---------------UCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 103018 0.66 0.828326
Target:  5'- aGGCCGCguaguccaccacGGGCucguagaagaccGGGGGCagGAGCGCGGg -3'
miRNA:   3'- aCCGGCGa-----------CCCG------------CUCUCG--CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 107005 0.66 0.829926
Target:  5'- gGGCCGggGucGGcCGAGAGCcGGGCGCGc -3'
miRNA:   3'- aCCGGCgaC--CC-GCUCUCG-CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 19102 0.66 0.829926
Target:  5'- gUGGCCGUUGGcCGuG-GCGAagcGCGCGu -3'
miRNA:   3'- -ACCGGCGACCcGCuCuCGCU---UGUGCu -5'
9212 5' -59.5 NC_002512.2 + 158564 0.66 0.829926
Target:  5'- gGGCCGCuccUGGcGCGAcAGCGu-CACGu -3'
miRNA:   3'- aCCGGCG---ACC-CGCUcUCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 158981 0.66 0.829926
Target:  5'- cGGCgGCcacGGCG-GGGCGGAgGCGGc -3'
miRNA:   3'- aCCGgCGac-CCGCuCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 108427 0.66 0.829926
Target:  5'- cGGCgGC-GGGCGcGGGGCGGACc--- -3'
miRNA:   3'- aCCGgCGaCCCGC-UCUCGCUUGugcu -5'
9212 5' -59.5 NC_002512.2 + 23225 0.66 0.829926
Target:  5'- gUGGugcauCCGCacGGCGAucGGCGAACACGGg -3'
miRNA:   3'- -ACC-----GGCGacCCGCUc-UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 204724 0.66 0.829926
Target:  5'- gGGCC-CgGGGCGGGGGgcCGGACcCGGg -3'
miRNA:   3'- aCCGGcGaCCCGCUCUC--GCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 15813 0.66 0.833108
Target:  5'- aGGCCGCcgUGGGacgaGGGgucguagagguagacGGCGGugACGGg -3'
miRNA:   3'- aCCGGCG--ACCCg---CUC---------------UCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 115467 0.66 0.837047
Target:  5'- cGGaCCGCgUGGGagccgguCGAGA-UGAGCGCGAg -3'
miRNA:   3'- aCC-GGCG-ACCC-------GCUCUcGCUUGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.