miRNA display CGI


Results 181 - 200 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 156478 0.7 0.608482
Target:  5'- gGGCgGCgggcucGGCGGGcugGGCGGACACGGc -3'
miRNA:   3'- aCCGgCGac----CCGCUC---UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 81985 0.71 0.59876
Target:  5'- gUGGCgGCggGGGCGucucgGGGGCGGuCGCGGc -3'
miRNA:   3'- -ACCGgCGa-CCCGC-----UCUCGCUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228118 0.71 0.58906
Target:  5'- cGGCCGCaacgucgugcUGGGCGccGA-CGGGCGCGAg -3'
miRNA:   3'- aCCGGCG----------ACCCGCu-CUcGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 122325 0.71 0.58906
Target:  5'- gUGGCC-CUGaGGCGGGGGaCGGACaACGu -3'
miRNA:   3'- -ACCGGcGAC-CCGCUCUC-GCUUG-UGCu -5'
9212 5' -59.5 NC_002512.2 + 154791 0.71 0.58906
Target:  5'- cUGGCuCGgaGGgaGCGGGAGUGAGCgACGGa -3'
miRNA:   3'- -ACCG-GCgaCC--CGCUCUCGCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 10465 0.71 0.58906
Target:  5'- aGGCCGCcgccgccccGGGCGuGGGCGu-CGCGGc -3'
miRNA:   3'- aCCGGCGa--------CCCGCuCUCGCuuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 116891 0.71 0.58906
Target:  5'- cUGGCgGCgGGGCcGGGGCGGGCuccuCGGa -3'
miRNA:   3'- -ACCGgCGaCCCGcUCUCGCUUGu---GCU- -5'
9212 5' -59.5 NC_002512.2 + 121005 0.71 0.58906
Target:  5'- cGGCagaGCgaagcgGGGCGugcugaccucGGGCGAGCGCGAc -3'
miRNA:   3'- aCCGg--CGa-----CCCGCu---------CUCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 80682 0.71 0.58906
Target:  5'- cGGCgGCgacggGGGCGAGcggcguccggggGGCGAgggcGCGCGGg -3'
miRNA:   3'- aCCGgCGa----CCCGCUC------------UCGCU----UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 121160 0.71 0.58906
Target:  5'- cGGCCGCggcccaGGGCGAGGcguucuCGGACgACGAc -3'
miRNA:   3'- aCCGGCGa-----CCCGCUCUc-----GCUUG-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 157165 0.71 0.58906
Target:  5'- gGGCCGg-GcGGCGuGGGCGGcgGCGCGAc -3'
miRNA:   3'- aCCGGCgaC-CCGCuCUCGCU--UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 228487 0.71 0.579389
Target:  5'- gGGaccgaagaCGCggagGGGCGAGAG-GGACGCGGa -3'
miRNA:   3'- aCCg-------GCGa---CCCGCUCUCgCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 50744 0.71 0.579389
Target:  5'- gGaGCUGCUGGGCcucuccGGCGAGCugGAu -3'
miRNA:   3'- aC-CGGCGACCCGcuc---UCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 185221 0.71 0.578423
Target:  5'- gUGGcCCGCgucguggaacgcgUGGGCGAGAGCcucGAcCGCGGu -3'
miRNA:   3'- -ACC-GGCG-------------ACCCGCUCUCG---CUuGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 154699 0.71 0.569752
Target:  5'- cGGCCGUccGGCGucGAGCG-GCGCGAc -3'
miRNA:   3'- aCCGGCGacCCGCu-CUCGCuUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 21250 0.71 0.569752
Target:  5'- gGGCggagaggGCUGGaGCGGGAGCGGgggacgacaGCACGGa -3'
miRNA:   3'- aCCGg------CGACC-CGCUCUCGCU---------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 219260 0.71 0.560154
Target:  5'- cUGGCUGCUcguccGGCaGGGGGCGGACGcCGAc -3'
miRNA:   3'- -ACCGGCGAc----CCG-CUCUCGCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 201346 0.71 0.560154
Target:  5'- gUGGCCGacaucGGGCGGcGGCGGACcCGAc -3'
miRNA:   3'- -ACCGGCga---CCCGCUcUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 123149 0.71 0.550602
Target:  5'- aGcGCCGCcgGGGcCGAGgaGGCGGACAgGAg -3'
miRNA:   3'- aC-CGGCGa-CCC-GCUC--UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 191291 0.71 0.550602
Target:  5'- gGGCgGCgGGGCGGGGGaCGGgggccgggACGCGGg -3'
miRNA:   3'- aCCGgCGaCCCGCUCUC-GCU--------UGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.