miRNA display CGI


Results 121 - 140 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 143555 0.68 0.750469
Target:  5'- cGGCCGCgcgucuccccgcGGGCGGGccGGCGGAgAgGGa -3'
miRNA:   3'- aCCGGCGa-----------CCCGCUC--UCGCUUgUgCU- -5'
9212 5' -59.5 NC_002512.2 + 186702 0.68 0.746788
Target:  5'- cGGCCuucgucugcggcggGUUGGGCGAGGagucggccaacgucGCGGGCACc- -3'
miRNA:   3'- aCCGG--------------CGACCCGCUCU--------------CGCUUGUGcu -5'
9212 5' -59.5 NC_002512.2 + 129211 0.68 0.743094
Target:  5'- -cGCCGCUGGccGCgGAGAaCGAACGCGc -3'
miRNA:   3'- acCGGCGACC--CG-CUCUcGCUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 130251 0.68 0.743094
Target:  5'- cGGgCGCcGGGCccuccGAGGGCGAcgaccgcgacgaGCGCGGg -3'
miRNA:   3'- aCCgGCGaCCCG-----CUCUCGCU------------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 107849 0.68 0.743094
Target:  5'- -cGCCGCcccGGGCGuGcGCGAGCGcCGAu -3'
miRNA:   3'- acCGGCGa--CCCGCuCuCGCUUGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 206337 0.68 0.743094
Target:  5'- gUGGCaCGUcGGGUuGGuGGCGAACAUGAu -3'
miRNA:   3'- -ACCG-GCGaCCCGcUC-UCGCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 54424 0.68 0.743094
Target:  5'- cGGCCuGCUGGGgGAagaggacaGGGgGAccgGCACGGu -3'
miRNA:   3'- aCCGG-CGACCCgCU--------CUCgCU---UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 9881 0.68 0.743094
Target:  5'- cGGCCucucgacccGCcGGGCGAGGGgGAGCGa-- -3'
miRNA:   3'- aCCGG---------CGaCCCGCUCUCgCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 6321 0.68 0.743094
Target:  5'- gUGGCCGCcGcccGCGGGGGgacCGGGCGCGGg -3'
miRNA:   3'- -ACCGGCGaCc--CGCUCUC---GCUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 82333 0.68 0.737526
Target:  5'- gGGCCGCcccggcggguagcggUGGGCGu--GCGGGgGCGGc -3'
miRNA:   3'- aCCGGCG---------------ACCCGCucuCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 153377 0.68 0.733797
Target:  5'- cGGCgGCU-GGCGguccGGAGCGAcguggaGCGCGGc -3'
miRNA:   3'- aCCGgCGAcCCGC----UCUCGCU------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 22178 0.68 0.733797
Target:  5'- cGG-CGCU-GGCGAuGGCGAugACGAu -3'
miRNA:   3'- aCCgGCGAcCCGCUcUCGCUugUGCU- -5'
9212 5' -59.5 NC_002512.2 + 229473 0.68 0.724419
Target:  5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3'
miRNA:   3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 36676 0.68 0.724419
Target:  5'- aGGCUGCcGGGCaacGGCGAGC-CGAa -3'
miRNA:   3'- aCCGGCGaCCCGcucUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 154561 0.68 0.724419
Target:  5'- cGGUCGCcaUGGGgGGGcaggauaacGGCGAGgGCGAc -3'
miRNA:   3'- aCCGGCG--ACCCgCUC---------UCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 69 0.68 0.724419
Target:  5'- cGGUCGCgGGcGCGAGgaGGCGAGagGCGGc -3'
miRNA:   3'- aCCGGCGaCC-CGCUC--UCGCUUg-UGCU- -5'
9212 5' -59.5 NC_002512.2 + 191528 0.68 0.724419
Target:  5'- aGGCCGUggggucGGGCGAcccGGCGGAucccCGCGAu -3'
miRNA:   3'- aCCGGCGa-----CCCGCUc--UCGCUU----GUGCU- -5'
9212 5' -59.5 NC_002512.2 + 194048 0.68 0.724419
Target:  5'- aGGCCGcCUGgcuGGUGAGGGCGcACAaGAc -3'
miRNA:   3'- aCCGGC-GAC---CCGCUCUCGCuUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 220536 0.68 0.724419
Target:  5'- gGaGCUGCUGcGCGAGGGCGu-CACGc -3'
miRNA:   3'- aC-CGGCGACcCGCUCUCGCuuGUGCu -5'
9212 5' -59.5 NC_002512.2 + 128197 0.68 0.724419
Target:  5'- gGGCCGCc-GGCGGGAcCGGGgACGGg -3'
miRNA:   3'- aCCGGCGacCCGCUCUcGCUUgUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.