miRNA display CGI


Results 141 - 160 of 233 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9212 5' -59.5 NC_002512.2 + 135357 0.68 0.721592
Target:  5'- cUGGCCGUcgaccgcuucguccUGGGCGGGuuCGAAgACGc -3'
miRNA:   3'- -ACCGGCG--------------ACCCGCUCucGCUUgUGCu -5'
9212 5' -59.5 NC_002512.2 + 118789 0.68 0.721592
Target:  5'- -cGCCGCcGGGCGGGAGCuguGGGCccccgucguggucgGCGAc -3'
miRNA:   3'- acCGGCGaCCCGCUCUCG---CUUG--------------UGCU- -5'
9212 5' -59.5 NC_002512.2 + 121885 0.69 0.718758
Target:  5'- aGGUCGCggGGGaCGcucggcgacgcgcggGGAGCGAGCGgGAc -3'
miRNA:   3'- aCCGGCGa-CCC-GC---------------UCUCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 203723 0.69 0.718758
Target:  5'- cGGCCuGCgacacggagacacgGGGCGGagauGAGCGGAUugGGu -3'
miRNA:   3'- aCCGG-CGa-------------CCCGCU----CUCGCUUGugCU- -5'
9212 5' -59.5 NC_002512.2 + 4221 0.69 0.71497
Target:  5'- cGGCCGCggGGaGCGGGAcGuCGAGCcccgACGGg -3'
miRNA:   3'- aCCGGCGa-CC-CGCUCU-C-GCUUG----UGCU- -5'
9212 5' -59.5 NC_002512.2 + 11460 0.69 0.71497
Target:  5'- gGGCCGgggaagGGGCgGAGAccGCGAGgACGAc -3'
miRNA:   3'- aCCGGCga----CCCG-CUCU--CGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 190551 0.69 0.71497
Target:  5'- cGGCUGCUGGGCaccGAG-GCGGccgucuuccACAcCGAc -3'
miRNA:   3'- aCCGGCGACCCG---CUCuCGCU---------UGU-GCU- -5'
9212 5' -59.5 NC_002512.2 + 130149 0.69 0.705457
Target:  5'- cGGCCGCgGGGCccGGcGGCGGGC-CGGc -3'
miRNA:   3'- aCCGGCGaCCCG--CUcUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 227995 0.69 0.705457
Target:  5'- gGGCCGa-GGGCcGGAGCcggacgGGACGCGGg -3'
miRNA:   3'- aCCGGCgaCCCGcUCUCG------CUUGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 170406 0.69 0.695887
Target:  5'- aGGCCGCUcgagacccgcuGGCGAGGGCcucGGAUACGu -3'
miRNA:   3'- aCCGGCGAc----------CCGCUCUCG---CUUGUGCu -5'
9212 5' -59.5 NC_002512.2 + 149514 0.69 0.695887
Target:  5'- aGGCCGC--GGCcGGAGCGGGC-CGGc -3'
miRNA:   3'- aCCGGCGacCCGcUCUCGCUUGuGCU- -5'
9212 5' -59.5 NC_002512.2 + 200788 0.69 0.694927
Target:  5'- aUGGCCGCcGccgccgaagacgaGGCGGGAcGCGAcggcauggACGCGAa -3'
miRNA:   3'- -ACCGGCGaC-------------CCGCUCU-CGCU--------UGUGCU- -5'
9212 5' -59.5 NC_002512.2 + 157373 0.69 0.686269
Target:  5'- gGGCCGCcGGGCaGGGAcCGGACGaGAu -3'
miRNA:   3'- aCCGGCGaCCCG-CUCUcGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 130454 0.69 0.686269
Target:  5'- aGGUCGUgucguccgacaGGaGCGGGGGCGGAgACGAa -3'
miRNA:   3'- aCCGGCGa----------CC-CGCUCUCGCUUgUGCU- -5'
9212 5' -59.5 NC_002512.2 + 152805 0.69 0.686269
Target:  5'- aGGuCCGCggcgacGGCGGGcGGCGAGCAgGAu -3'
miRNA:   3'- aCC-GGCGac----CCGCUC-UCGCUUGUgCU- -5'
9212 5' -59.5 NC_002512.2 + 16463 0.69 0.686269
Target:  5'- gGGCCGCcucGGGCGgagacgacAGAGCGuAugGCGc -3'
miRNA:   3'- aCCGGCGa--CCCGC--------UCUCGC-UugUGCu -5'
9212 5' -59.5 NC_002512.2 + 57041 0.69 0.680478
Target:  5'- aGGCCGCguccgacgaccgggGGGCGccGGGCGAACGg-- -3'
miRNA:   3'- aCCGGCGa-------------CCCGCu-CUCGCUUGUgcu -5'
9212 5' -59.5 NC_002512.2 + 193557 0.69 0.67661
Target:  5'- cGGgCGCUGuGGUGGGAGgGGugGgGAu -3'
miRNA:   3'- aCCgGCGAC-CCGCUCUCgCUugUgCU- -5'
9212 5' -59.5 NC_002512.2 + 123552 0.69 0.67661
Target:  5'- cGGgCGCggacgucgaGGGgGAGAGCGAcggGCugGAc -3'
miRNA:   3'- aCCgGCGa--------CCCgCUCUCGCU---UGugCU- -5'
9212 5' -59.5 NC_002512.2 + 134084 0.69 0.666918
Target:  5'- cGGCugCGCUGGGCGAGcuacgaGGCGAcgauaagccugACGcCGAg -3'
miRNA:   3'- aCCG--GCGACCCGCUC------UCGCU-----------UGU-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.